c304377b711b04c2646172d6a1ebf8b5 *DESCRIPTION
9081582c97fe69b97b803f174848881c *LICENSE
8cf4f463d1eb3a36915f9a7c7f2e331b *NAMESPACE
823a7430863ca2aa458320f78a4b007e *NEWS.md
7c36c38b42e082a6692941f6d35fea3b *R/GaussianMixtureCalls.R
8f77071b8da33bae277a9d643ef6b174 *R/clustering.R
0afbd76be21e3e9281c24648b8d6cf5b *R/copyNumberCalculation.R
2e53e8ca8ee7242b101d88a21e686131 *R/createTapestriExperiment.R
cd95e5348abcc650515430c6763572e6 *R/getChrOrder.R
93ab8ac8f0f689b837039d3f8ad9929b *R/getCytobands.R
3796565db5aea12a4b0f323607635ff0 *R/helperFunctions.R
5decb8b995f71bdeff5bf63dbfef5ca6 *R/karyotapR-package.R
498239c01b170a08dc475935574768b7 *R/moveNonGenomeProbes.R
8f9f04365a49f51a02f3395346ebf64d *R/normalization.R
799133c940e02c1b4dc51d415284ad21 *R/parseBarcodedReads.R
88744e824f3828ea6badea149ae01213 *R/plots.R
289f85d8250aa81f133b18caf90eeb26 *R/sysdata.rda
a9d89717676b6616c174c6d8143f9ad5 *R/tapestriExperimentDefinition.R
9fe1a745c856e704235292d4834d0774 *README.md
313d2b3b2abee08e87f1291ed3d71352 *inst/WORDLIST
c24684c23dda928e9d2f324f5b43125a *man/CreateTapestriExperiment.Rd
ab72b1c351e3800aff5438a78c807584 *man/PCAKneePlot.Rd
bd3d0c853828a0036ead592f7ec56aaf *man/TapestriExperiment-class.Rd
2dda796b618e288a50aad054794f220c *man/assayBoxPlot.Rd
147ddac2f4d6087db292424dda6d5f79 *man/assayHeatmap.Rd
07f57e76e86e4a0b8d736a4855d598d5 *man/calcCopyNumber.Rd
f02401aeb71045b106899cae897791f6 *man/calcGMMCopyNumber.Rd
c00a39833ae662577c285bce22471dde *man/calcNormCounts.Rd
97d40c58b6a9f2c90f76e786a75d54be *man/calcSmoothCopyNumber.Rd
2139ddc6a4f825845c74f2c724c01f5a *man/callSampleLables.Rd
89a6c724b28a3d46bd895b0353fae88f *man/corner.Rd
a2d8d832f2611a5cef450f81205c6a58 *man/countBarcodedReads.Rd
7636478044d44a408971773cb4d87b0f *man/figures/README-boxplot-1.png
a64dc307193839e3c8f841e4b7d15c08 *man/figures/README-heatmaps1-1.png
f1759c98854e13fb026b88715e660d44 *man/figures/README-heatmaps1-2.png
a97e55d3d02f58bb65d5bc6ead09f92a *man/figures/README-kneeplot-1.png
7969dd1f4ff7383aba65fb19788f0da5 *man/figures/README-umap1-1.png
a7822cb8ac3fcd43f9fe2eef5ab0f5a5 *man/figures/README-umap2-1.png
4a9be69bb28f101c5fd629603238b32b *man/figures/logo.png
9bfcb71366dc53ef9ec7d89d352daf33 *man/getChrOrder.Rd
11b7a284b2a652c8fc6bf0ad01f6c98e *man/getCytobands.Rd
40fab2388dfba48331f93b51ba521d92 *man/getGMMBoundaries.Rd
28ad1551ec943003fad97957f78712d4 *man/getTidyData.Rd
35de794fe9da53032f0e44834b9c0306 *man/karyotapR-package.Rd
5c8ee131aafee21ddf9ae269176de218 *man/moveNonGenomeProbes.Rd
a78b5ae18d1afc20dee75824b33b540d *man/newTapestriExperimentExample.Rd
da8851f0685008e8a07c3fc1950972ad *man/plotCopyNumberGMM.Rd
2836dc7a05e181d3a660403081af64b3 *man/reducedDimPlot.Rd
81e7a7b343a5edddad6eca790156c722 *man/runClustering.Rd
a53e35fa0207adc7bf3d80d986f59b5d *man/runPCA.Rd
dc0215fdbade06e9f3ca7247d00ce963 *man/runUMAP.Rd
1aadf672954d79c4da0e0c055576a731 *man/slotGettersSetters.Rd
2465bbac8a596e4b1488a9b9625aa31d *tests/testthat.R
0803a43b1866b1e36eff6420706a6965 *tests/testthat/test-normalization.R
