c86e06b059416776e2c389ec208cda6c *DESCRIPTION
612ead33b9aea33eae0edeff3e8dabea *NAMESPACE
19284d3cdd3d2a89961af0130535e6ed *R/data.R
0ec817e2589e37763ee8703d18be7de7 *R/docData.R
7d1f0dd7fdd3dd7d52ec79f3870a82f7 *R/helpers.R
6ded33c8b63632fe3eec2a459911fc2a *R/imputeAges.R
2c9912bf20ce1d5eb6c2c0034f990ef6 *R/mhChain.R
04b9248bbce59b80ea56375069a906bd *R/mhLoglikehood.r
5fc110fe5aec1c0915898506ac02df1e *R/outputHelpers.R
e02d7fd97f0548d99128d78e45b489ff *R/penetrance-package.R
806de2633db32e98d07070640e7ac09c *R/penetranceMain.R
6cf917fd95e0d2f0af2cea001eb94a88 *R/priorElicitation.R
2b97a05ece40c0d987195513b9570d1a *README.md
8d73a18ae9c7de742c69720a5ebef4a5 *build/vignette.rds
b415ca357873cf32a7f8d24748d55ada *data/out_sim.RData
04c10929ef37312dfc12649858c54966 *data/simulated_families.RData
028f779f778493c23940411491838981 *data/test_fam2.RData
1bd29a3666577bd9bf3c3f44702fe932 *inst/doc/simulation_study.R
9c0c341cff3ebc1dd3ffefe212b12d47 *inst/doc/simulation_study.Rmd
d77817d05988df7d897f71c103050b92 *inst/doc/simulation_study.html
88b6c3e2fc594fcd84aa9ad238418e37 *inst/doc/simulation_study_real.R
1853c2f6736509fd13ec08d513e21c60 *inst/doc/simulation_study_real.Rmd
a2a6c37e8fe63de2152c67c755e902d4 *inst/doc/simulation_study_real.html
ebfa12b728e5bba4600a86d530315061 *inst/doc/using_penetrance.R
71112d232dadd9f1153994594e9d4f36 *inst/doc/using_penetrance.Rmd
fe7ee6691acd43e8679aac6693296dd6 *inst/doc/using_penetrance.html
f19dbd0fe31bee3ad26f15c4a871ddc0 *man/absValue.Rd
62cbcd8b68a8845aa9140a3ca17088b0 *man/apply_burn_in.Rd
07f3c9ab3db12046accbf0b1715c89de *man/apply_thinning.Rd
63fd1803662235f4b2e0cbb0d921a6bb *man/baseline_data_default.Rd
fd59c050c5f94de869f622a7874274b8 *man/calculateBaseline.Rd
0613c9b333843381c59ec547bf02636f *man/calculateEmpiricalDensity.Rd
c437d9810ef379cb9acef17547483142 *man/calculateNCPen.Rd
dd81d8d59f85162ff3b1e5492f8bad4f *man/calculate_weibull_parameters.Rd
575b9df3d769a1541e36d40911c7384b *man/combine_chains.Rd
a836cf23ff2ad2042d6a1f9ea18f3e14 *man/combine_chains_noSex.Rd
82c72b19fefbd9dfbb91398ecd593bd9 *man/distribution_data_default.Rd
14d2ce2c8ef8385ba890e8cd15e174fc *man/drawBaseline.Rd
09368c344cd3d82da83c96ec49d2cf25 *man/drawEmpirical.Rd
7d27da3ec514fa8ff57a37eafeb94b03 *man/generate_density_plots.Rd
b678816a6ab3e2a219dc37204100ba2d *man/generate_summary.Rd
1bd3819ec7745acff70c2f9c4213392a *man/generate_summary_noSex.Rd
47b130047cb78d8aaa68410be034d151 *man/imputeAges.Rd
dc27468fdc64a82fb4d86bef7780b37b *man/imputeAgesInit.Rd
8b819876e3518a5fe002ceeb374ec396 *man/imputeUnaffectedAges.Rd
0a07c8525fb25996988b86f1992f854e *man/lik.fn.Rd
42aca7740cdcfd0408d1d637d37439a6 *man/lik_noSex.Rd
7e4964ddb8aac7b7cb99191fe8c95013 *man/makePriors.Rd
6bc5633035780bf799fbe35b389fc29a *man/mhChain.Rd
b7a68e65de8559a4bdf4e180f9636995 *man/mhLogLikelihood_clipp.Rd
6a626703ba7f01e6699dd4a708af0d96 *man/mhLogLikelihood_clipp_noSex.Rd
79a7fdd235061447678339108dd56d9f *man/out_sim.Rd
45b8cbfc7898da01de429491392e26e9 *man/penetrance.Rd
18e3e5c69f032a4f6713bc373bd5f619 *man/plot_acf.Rd
c443daf58806a2d58839f3d6c630e06a *man/plot_loglikelihood.Rd
aeb9d0671ce7474b637738f816f06708 *man/plot_pdf.Rd
7c30c7f685e1394955a30081962e1ef1 *man/plot_penetrance.Rd
e8ed4b9feac2903f9463529e816c7f52 *man/plot_trace.Rd
d3a53ec2f637fd58048ec7870a8734d0 *man/printRejectionRates.Rd
d76cc1bccc7d06e5b47c62e0d2baa3e4 *man/prior_params_default.Rd
20929b0b0cdb3983d0374c11e071e769 *man/risk_proportion_default.Rd
135b1a00896f4aebc61c3781b17180e7 *man/simulated_families.Rd
79e26aed8fbc6e11f215c98edc806fc5 *man/test_fam2.Rd
654c5c3c20074ebcc7ae8a4b591faea3 *man/transformDF.Rd
72dbf73f00164739b5353db393d75db0 *man/validate_allele_freq.Rd
5f97b023f5fa5ccc69eb18266198167e *man/validate_baseline_data.Rd
62d6bb2ee07cf5ae4dfe0b0db82062b3 *man/validate_weibull_parameters.Rd
9c0c341cff3ebc1dd3ffefe212b12d47 *vignettes/simulation_study.Rmd
1853c2f6736509fd13ec08d513e21c60 *vignettes/simulation_study_real.Rmd
71112d232dadd9f1153994594e9d4f36 *vignettes/using_penetrance.Rmd
