Last updated on 2025-07-12 22:49:10 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.1 | 43.65 | 398.68 | 442.33 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.1 | 26.43 | 302.18 | 328.61 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.1 | 679.19 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.1 | 653.96 | OK | |||
| r-devel-windows-x86_64 | 1.0.1 | 44.00 | 335.00 | 379.00 | OK | |
| r-patched-linux-x86_64 | 1.0.1 | 43.81 | 372.67 | 416.48 | OK | |
| r-release-linux-x86_64 | 1.0.1 | 39.82 | 376.64 | 416.46 | ERROR | |
| r-release-macos-arm64 | 1.0.1 | 5.00 | ERROR | |||
| r-release-macos-x86_64 | 1.0.1 | 6.00 | ERROR | |||
| r-release-windows-x86_64 | 1.0.1 | 46.00 | 337.00 | 383.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.1 | 10.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0.1 | 11.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.0.1 | 59.00 | 453.00 | 512.00 | OK |
Version: 1.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [12s/16s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(GencoDymo2)
Welcome to GencoDymo2 (v1.0.1)!
Tools for dynamic GENCODE annotation analysis.
>
> test_check("GencoDymo2")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-files.R:3:3'): get_latest_release works for human species ──────
<COULDNT_CONNECT/GenericCurlError/error/condition>
Error in `function (type, msg, asError = TRUE)
{
if (!is.character(type)) {
i = match(type, CURLcodeValues)
typeName = if (is.na(i))
character()
else names(CURLcodeValues)[i]
}
typeName = gsub("^CURLE_", "", typeName)
fun = (if (asError)
stop
else warning)
fun(structure(list(message = msg, call = sys.call()), class = c(typeName,
"GenericCurlError", "error", "condition")))
}(7L, "Failed to connect to ftp.ebi.ac.uk port 443 after 36 ms: Could not connect to server",
TRUE)`: Failed to connect to ftp.ebi.ac.uk port 443 after 36 ms: Could not connect to server
Backtrace:
▆
1. ├─GencoDymo2::get_latest_release("human", verbose = FALSE) at test-files.R:3:3
2. │ └─RCurl::getURL(url, ftp.use.epsv = FALSE, dirlistonly = TRUE)
3. │ └─RCurl::curlPerform(curl = curl, .opts = opts, .encoding = .encoding)
4. └─RCurl (local) `<fn>`(...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.1
Check: examples
Result: ERROR
Running examples in ‘GencoDymo2-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: get_latest_release
> ### Title: Get the Latest Gencode Release Dynamically
> ### Aliases: get_latest_release
>
> ### ** Examples
>
> # Retrieve the latest release version for human
> human_release <- get_latest_release(species = "human", verbose = FALSE)
Error in function (type, msg, asError = TRUE) :
Failed to connect to ftp.ebi.ac.uk port 443 after 204 ms: Could not connect to server
Calls: get_latest_release -> <Anonymous> -> curlPerform -> <Anonymous> -> fun
Execution halted
Flavor: r-release-linux-x86_64
Version: 1.0.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘BSgenome.Hsapiens.UCSC.hg38’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 1.0.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘BSgenome.Hsapiens.UCSC.hg38’
Package required and available but unsuitable version: ‘GenomicRanges’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-arm64
Version: 1.0.1
Check: package dependencies
Result: ERROR
Package required but not available: ‘BSgenome.Hsapiens.UCSC.hg38’
Packages required and available but unsuitable versions:
'Biostrings', 'GenomicRanges', 'rtracklayer'
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-oldrel-macos-x86_64