Last updated on 2025-03-15 18:50:00 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.3.12 | 54.33 | 815.31 | 869.64 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 2.3.12 | 0.72 | 1.44 | 2.16 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 2.3.12 | 1287.31 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.3.12 | 1129.65 | OK | |||
| r-devel-macos-arm64 | 2.3.12 | 197.00 | OK | |||
| r-devel-macos-x86_64 | 2.3.12 | 390.00 | OK | |||
| r-devel-windows-x86_64 | 2.3.12 | 55.00 | 568.00 | 623.00 | NOTE | |
| r-patched-linux-x86_64 | 2.3.12 | 50.19 | 679.82 | 730.01 | WARN | |
| r-release-linux-x86_64 | 2.3.12 | 48.48 | 668.47 | 716.95 | OK | |
| r-release-macos-arm64 | 2.3.12 | 181.00 | NOTE | |||
| r-release-macos-x86_64 | 2.3.12 | 286.00 | NOTE | |||
| r-release-windows-x86_64 | 2.3.12 | 57.00 | 588.00 | 645.00 | OK | |
| r-oldrel-macos-arm64 | 2.3.12 | NOTE | ||||
| r-oldrel-macos-x86_64 | 2.3.12 | 419.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 2.3.12 | 72.00 | 524.00 | 596.00 | NOTE |
Version: 2.3.12
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
AnnotateDBSVCF.Rd: BSgenome
AnnotateSBSVCF.Rd: BSgenome
GeneExpressionData.Rd: data.table
ICAMS.Rd: BSgenome
MutectVCFFilesToCatalog.Rd: BSgenome
MutectVCFFilesToCatalogAndPlotToPdf.Rd: BSgenome
MutectVCFFilesToZipFile.Rd: BSgenome
NormalizeGenomeArg.Rd: BSgenome
PlotTransBiasGeneExp.Rd: data.table
PlotTransBiasGeneExpToPdf.Rd: data.table
StrelkaSBSVCFFilesToCatalog.Rd: BSgenome
StrelkaSBSVCFFilesToCatalogAndPlotToPdf.Rd: BSgenome
StrelkaSBSVCFFilesToZipFile.Rd: BSgenome
VCFsToCatalogs.Rd: BSgenome
VCFsToCatalogsAndPlotToPdf.Rd: BSgenome
VCFsToDBSCatalogs.Rd: BSgenome
VCFsToSBSCatalogs.Rd: BSgenome
VCFsToZipFile.Rd: BSgenome
revc.Rd: reverseComplement
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-windows-x86_64, r-patched-linux-x86_64
Version: 2.3.12
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 2.3.12
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Rd warning: AnnotateDBSVCF.Rd:16: missing link ‘BSgenome’
Rd warning: AnnotateSBSVCF.Rd:16: missing link ‘BSgenome’
Rd warning: GeneExpressionData.Rd:10: missing link ‘data.table’
Rd warning: ICAMS.Rd:194: missing link ‘BSgenome’
Rd warning: MutectVCFFilesToCatalog.Rd:26: missing link ‘BSgenome’
Rd warning: MutectVCFFilesToCatalogAndPlotToPdf.Rd:27: missing link ‘BSgenome’
Rd warning: MutectVCFFilesToZipFile.Rd:33: missing link ‘BSgenome’
Rd warning: NormalizeGenomeArg.Rd:5: missing link ‘BSgenome’
Rd warning: NormalizeGenomeArg.Rd:20: missing link ‘BSgenome’
Rd warning: NormalizeGenomeArg.Rd:15: missing link ‘BSgenome’
Rd warning: NormalizeGenomeArg.Rd:16: missing link ‘BSgenome’
Rd warning: PlotTransBiasGeneExp.Rd:23: missing link ‘data.table’
Rd warning: PlotTransBiasGeneExpToPdf.Rd:26: missing link ‘data.table’
Rd warning: StrelkaSBSVCFFilesToCatalog.Rd:24: missing link ‘BSgenome’
Rd warning: StrelkaSBSVCFFilesToCatalogAndPlotToPdf.Rd:25: missing link ‘BSgenome’
Rd warning: StrelkaSBSVCFFilesToZipFile.Rd:31: missing link ‘BSgenome’
Rd warning: VCFsToCatalogs.Rd:41: missing link ‘BSgenome’
Rd warning: VCFsToCatalogsAndPlotToPdf.Rd:45: missing link ‘BSgenome’
Rd warning: VCFsToDBSCatalogs.Rd:29: missing link ‘BSgenome’
Rd warning: VCFsToSBSCatalogs.Rd:29: missing link ‘BSgenome’
Rd warning: VCFsToZipFile.Rd:52: missing link ‘BSgenome’
Rd warning: revc.Rd:17: missing link ‘reverseComplement’
Flavor: r-patched-linux-x86_64
Version: 2.3.12
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'BSgenome.Hsapiens.1000genomes.hs37d5',
'BSgenome.Hsapiens.UCSC.hg38', 'BSgenome.Mmusculus.UCSC.mm10'
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 2.3.12
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'BSgenome.Hsapiens.1000genomes.hs37d5',
'BSgenome.Mmusculus.UCSC.mm10'
Flavor: r-oldrel-windows-x86_64