CRAN Package Check Results for Package ICDS

Last updated on 2025-03-17 00:49:57 CET.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.3 27.23 255.30 282.53 ERROR
r-devel-linux-x86_64-debian-gcc 0.1.3 19.03 171.39 190.42 ERROR
r-devel-linux-x86_64-fedora-clang 0.1.3 OK
r-devel-linux-x86_64-fedora-gcc 0.1.3 477.22 OK
r-devel-macos-arm64 0.1.3 5.00 ERROR
r-devel-macos-x86_64 0.1.3 274.00 OK
r-devel-windows-x86_64 0.1.3 25.00 213.00 238.00 OK
r-patched-linux-x86_64 0.1.3 26.45 246.13 272.58 OK
r-release-linux-x86_64 0.1.3 24.79 225.99 250.78 OK
r-release-macos-arm64 0.1.3 115.00 OK
r-release-macos-x86_64 0.1.3 360.00 OK
r-release-windows-x86_64 0.1.3 26.00 202.00 228.00 OK
r-oldrel-macos-arm64 0.1.3 OK
r-oldrel-macos-x86_64 0.1.3 268.00 OK
r-oldrel-windows-x86_64 0.1.3 33.00 285.00 318.00 OK

Check Details

Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘ICDS.Rmd’ using rmarkdown Quitting from lines 140-146 [unnamed-chunk-12] (ICDS.Rmd) Error: processing vignette 'ICDS.Rmd' failed with diagnostics: error in evaluating the argument 'object' in selecting a method for function 'edges': cannot download pathway data: are you offline? --- failed re-building ‘ICDS.Rmd’ SUMMARY: processing the following file failed: ‘ICDS.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘ICDS.Rmd’ using rmarkdown Quitting from ICDS.Rmd:139-146 [unnamed-chunk-12] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `h()`: ! error in evaluating the argument 'object' in selecting a method for function 'edges': cannot download pathway data: are you offline? --- Backtrace: ▆ 1. ├─ICDS::PlotSubpathway(...) 2. │ ├─graph::edges(...) 3. │ ├─graphite::convertIdentifiers(...) 4. │ └─graphite::convertIdentifiers(...) 5. │ └─graphite:::loadDbs(x@species) 6. │ └─graphite:::loadMetaboliteDb() 7. │ ├─methods::new("MetaboliteDb", table = metabolites()) 8. │ │ ├─methods::initialize(value, ...) 9. │ │ └─methods::initialize(value, ...) 10. │ └─graphite:::metabolites() 11. │ └─graphite:::loadData("metabolites") 12. │ └─graphite:::fetchRemote(name, path) 13. │ └─base::stop("cannot download pathway data: are you offline?") 14. └─base::.handleSimpleError(...) 15. └─base (local) h(simpleError(msg, call)) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'ICDS.Rmd' failed with diagnostics: error in evaluating the argument 'object' in selecting a method for function 'edges': cannot download pathway data: are you offline? --- failed re-building ‘ICDS.Rmd’ SUMMARY: processing the following file failed: ‘ICDS.Rmd’ Error: Vignette re-building failed. Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 0.1.3
Check: package dependencies
Result: ERROR Package required but not available: ‘org.Hs.eg.db’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-devel-macos-arm64