Last updated on 2025-03-17 00:49:57 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.3 | 27.23 | 255.30 | 282.53 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.1.3 | 19.03 | 171.39 | 190.42 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.1.3 | OK | ||||
| r-devel-linux-x86_64-fedora-gcc | 0.1.3 | 477.22 | OK | |||
| r-devel-macos-arm64 | 0.1.3 | 5.00 | ERROR | |||
| r-devel-macos-x86_64 | 0.1.3 | 274.00 | OK | |||
| r-devel-windows-x86_64 | 0.1.3 | 25.00 | 213.00 | 238.00 | OK | |
| r-patched-linux-x86_64 | 0.1.3 | 26.45 | 246.13 | 272.58 | OK | |
| r-release-linux-x86_64 | 0.1.3 | 24.79 | 225.99 | 250.78 | OK | |
| r-release-macos-arm64 | 0.1.3 | 115.00 | OK | |||
| r-release-macos-x86_64 | 0.1.3 | 360.00 | OK | |||
| r-release-windows-x86_64 | 0.1.3 | 26.00 | 202.00 | 228.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.3 | OK | ||||
| r-oldrel-macos-x86_64 | 0.1.3 | 268.00 | OK | |||
| r-oldrel-windows-x86_64 | 0.1.3 | 33.00 | 285.00 | 318.00 | OK |
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘ICDS.Rmd’ using rmarkdown
Quitting from lines 140-146 [unnamed-chunk-12] (ICDS.Rmd)
Error: processing vignette 'ICDS.Rmd' failed with diagnostics:
error in evaluating the argument 'object' in selecting a method for function 'edges': cannot download pathway data: are you offline?
--- failed re-building ‘ICDS.Rmd’
SUMMARY: processing the following file failed:
‘ICDS.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.1.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘ICDS.Rmd’ using rmarkdown
Quitting from ICDS.Rmd:139-146 [unnamed-chunk-12]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'object' in selecting a method for function 'edges': cannot download pathway data: are you offline?
---
Backtrace:
▆
1. ├─ICDS::PlotSubpathway(...)
2. │ ├─graph::edges(...)
3. │ ├─graphite::convertIdentifiers(...)
4. │ └─graphite::convertIdentifiers(...)
5. │ └─graphite:::loadDbs(x@species)
6. │ └─graphite:::loadMetaboliteDb()
7. │ ├─methods::new("MetaboliteDb", table = metabolites())
8. │ │ ├─methods::initialize(value, ...)
9. │ │ └─methods::initialize(value, ...)
10. │ └─graphite:::metabolites()
11. │ └─graphite:::loadData("metabolites")
12. │ └─graphite:::fetchRemote(name, path)
13. │ └─base::stop("cannot download pathway data: are you offline?")
14. └─base::.handleSimpleError(...)
15. └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ICDS.Rmd' failed with diagnostics:
error in evaluating the argument 'object' in selecting a method for function 'edges': cannot download pathway data: are you offline?
--- failed re-building ‘ICDS.Rmd’
SUMMARY: processing the following file failed:
‘ICDS.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.3
Check: package dependencies
Result: ERROR
Package required but not available: ‘org.Hs.eg.db’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavor: r-devel-macos-arm64