Last updated on 2026-10-16 15:51:30 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 2.0.1 | 3.45 | 204.07 | 207.52 | OK | |
| r-devel-linux-x86_64-debian-gcc | 2.0.1 | 3.09 | 135.12 | 138.21 | OK | |
| r-devel-linux-x86_64-fedora-clang | 2.0.1 | 149.73 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 2.0.1 | 99.24 | ERROR | |||
| r-devel-windows-x86_64 | 2.0.1 | 8.00 | 253.00 | 261.00 | OK | |
| r-patched-linux-x86_64 | 2.0.1 | 4.17 | 190.06 | 194.23 | OK | |
| r-release-linux-x86_64 | 2.0.1 | 3.57 | 193.94 | 197.51 | OK | |
| r-release-macos-arm64 | 2.0.1 | 1.00 | 49.00 | 50.00 | OK | |
| r-release-macos-x86_64 | 2.0.1 | 4.00 | 293.00 | 297.00 | OK | |
| r-release-windows-x86_64 | 2.0.1 | 7.00 | 241.00 | 248.00 | OK | |
| r-oldrel-macos-arm64 | 2.0.1 | 1.00 | 54.00 | 55.00 | OK | |
| r-oldrel-macos-x86_64 | 2.0.1 | 3.00 | 400.00 | 403.00 | OK | |
| r-oldrel-windows-x86_64 | 2.0.1 | 8.00 | 313.00 | 321.00 | OK |
Version: 2.0.1
Check: examples
Result: ERROR
Running examples in ‘MIC-Ex.R’ failed
The error most likely occurred in:
> ### Name: mic_r_breakpoint
> ### Title: R breakpoint for MIC
> ### Aliases: mic_r_breakpoint
>
> ### ** Examples
>
> mic_r_breakpoint("B_ESCHR_COLI", "AMK")
Error in mic_r_breakpoint("B_ESCHR_COLI", "AMK") :
No clinical breakpoints available for AMKB_ESCHR_COLI(consider using accept_ecoff if appropriate.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 2.0.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [64s/85s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(MIC)
Attaching package: 'MIC'
The following object is masked from 'package:base':
table
>
> test_check("MIC")
Saving _problems/test-mic_manipulation-152.R
Saving _problems/test-mic_manipulation-167.R
Saving _problems/test-validation-182.R
Saving _problems/test-validation-205.R
Saving _problems/test-validation-217.R
Saving _problems/test-validation-219.R
[ FAIL 6 | WARN 7 | SKIP 0 | PASS 176 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-mic_manipulation.R:150:3'): test mic_s_breakpoint ────────────
Expected `mic_s_breakpoint(mo = "E. coli", ab = "CHL", accept_ecoff = TRUE)` to be an S3 object.
Actual OO type: none.
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-mic_manipulation.R:150:3
2. │ └─base::withCallingHandlers(...)
3. └─testthat::expect_s3_class(...)
── Failure ('test-mic_manipulation.R:165:3'): test mic_r_breakpoint ────────────
Expected `mic_r_breakpoint(mo = "E. coli", ab = "CHL", accept_ecoff = TRUE)` to be an S3 object.
Actual OO type: none.
Backtrace:
▆
1. ├─base::suppressMessages(...) at test-mic_manipulation.R:165:3
2. │ └─base::withCallingHandlers(...)
3. └─testthat::expect_s3_class(...)
── Failure ('test-validation.R:182:3'): test compare_sir ───────────────────────
Expected `sum_val$very_major_error_pcent[sum_val$ab == "GEN"]` to equal 50.
Differences:
`actual`: 0.0
`expected`: 50.0
── Failure ('test-validation.R:204:3'): test fall back to ECOFFS in compare_mic ──
Expected `val$error[val$ab == "CHL"]` to equal `factor("vM", levels = c("M", "vM", "m"))`.
Differences:
`actual`: "NA"
`expected`: "vM"
── Failure ('test-validation.R:217:3'): test fall back to ECOFFS in compare_mic ──
Expected `sum_val$very_major_error_pcent[sum_val$ab == "CHL"]` to equal 25.
Differences:
`actual`: 0.0
`expected`: 25.0
── Failure ('test-validation.R:219:3'): test fall back to ECOFFS in compare_mic ──
Expected `sum_val$major_error_pcent[sum_val$ab == "CHL"]` to equal 25.
Differences:
`actual`: 0.0
`expected`: 25.0
[ FAIL 6 | WARN 7 | SKIP 0 | PASS 176 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc