Last updated on 2026-03-15 20:51:49 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.8.0 | 10.62 | 385.60 | 396.22 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.8.0 | 7.28 | 250.60 | 257.88 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.8.0 | 17.00 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 0.8.0 | 17.00 | 692.05 | 709.05 | OK | |
| r-devel-macos-arm64 | 0.8.0 | 2.00 | 86.00 | 88.00 | OK | |
| r-devel-windows-x86_64 | 0.8.0 | 13.00 | 371.00 | 384.00 | OK | |
| r-patched-linux-x86_64 | 0.8.0 | 8.27 | 379.13 | 387.40 | OK | |
| r-release-linux-x86_64 | 0.8.0 | 9.03 | 373.53 | 382.56 | OK | |
| r-release-macos-arm64 | 0.8.0 | 2.00 | 80.00 | 82.00 | OK | |
| r-release-macos-x86_64 | 0.8.0 | 7.00 | 738.00 | 745.00 | OK | |
| r-release-windows-x86_64 | 0.8.0 | 12.00 | 385.00 | 397.00 | OK | |
| r-oldrel-macos-arm64 | 0.8.0 | 2.00 | 91.00 | 93.00 | OK | |
| r-oldrel-macos-x86_64 | 0.8.0 | 7.00 | 624.00 | 631.00 | OK | |
| r-oldrel-windows-x86_64 | 0.8.0 | 16.00 | 514.00 | 530.00 | OK |
Version: 0.8.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [19s/28s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(NEONiso)
>
> test_check("NEONiso")
Saving _problems/test-data_extraction-9.R
Saving _problems/test-data_ingestion-23.R
Saving _problems/test-data_regression-12.R
Saving _problems/test-gold_file_regression-51.R
Saving _problems/test-gold_file_regression-64.R
Saving _problems/test-gold_file_regression-81.R
Saving _problems/test-gold_file_regression-92.R
Saving _problems/test-gold_file_regression-106.R
Saving _problems/test-gold_file_regression-115.R
Saving _problems/test-hdf5_roundtrip-18.R
Saving _problems/test-hdf5_roundtrip-43.R
Saving _problems/test-hdf5_roundtrip-61.R
Saving _problems/test-hdf5_roundtrip-75.R
Saving _problems/test-hdf5_roundtrip-91.R
Saving _problems/test-hdf5_roundtrip-106.R
Saving _problems/test-hdf5_roundtrip-126.R
Saving _problems/test-hdf5_roundtrip-140.R
Saving _problems/test-hdf5_roundtrip-156.R
Saving _problems/test-hdf5_roundtrip-180.R
Saving _problems/test-hdf5_roundtrip-200.R
Saving _problems/test-hdf5_roundtrip-217.R
Saving _problems/test-hdf5_roundtrip-244.R
Saving _problems/test-high_level_functions-35.R
Saving _problems/test-high_level_functions-47.R
Saving _problems/test-high_level_functions-60.R
Saving _problems/test-high_level_functions-72.R
Saving _problems/test-high_level_functions-81.R
Saving _problems/test-high_level_functions-85.R
Saving _problems/test-output_values-11.R
Saving _problems/test-regression_snapshots-20.R
Saving _problems/test-regression_snapshots-48.R
Saving _problems/test-regression_snapshots-68.R
Saving _problems/test-regression_snapshots-94.R
Saving _problems/test-regression_snapshots-111.R
Saving _problems/test-regression_snapshots-133.R
[ FAIL 35 | WARN 0 | SKIP 0 | PASS 60 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-data_extraction.R:9:1'): (code run outside of `test_that()`) ───
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso::ingest_data(fin, analyte = "Co2", amb_avg = 9, ref_avg = 9) at test-data_extraction.R:9:1
2. └─neonUtilities::stackEddy(...)
── Error ('test-data_ingestion.R:23:1'): (code run outside of `test_that()`) ───
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso::ingest_data(fin, analyte = "Co2", amb_avg = 9, ref_avg = 9) at test-data_ingestion.R:23:1
2. └─neonUtilities::stackEddy(...)
── Error ('test-data_regression.R:12:1'): (code run outside of `test_that()`) ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso::ingest_data(fin, analyte = "Co2", amb_avg = 9, ref_avg = 9) at test-data_regression.R:12:1
2. └─neonUtilities::stackEddy(...)
── Error ('test-gold_file_regression.R:49:5'): carbon gainoffset cal_df matches baseline ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-gold_file_regression.R:48:3
2. │ └─base::withCallingHandlers(...)
3. └─NEONiso::calibrate_carbon(...) at test-gold_file_regression.R:49:5
4. └─NEONiso::ingest_data(...)
5. └─neonUtilities::stackEddy(...)
── Error ('test-gold_file_regression.R:62:5'): carbon gainoffset ambient matches baseline ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-gold_file_regression.R:61:3
2. │ └─base::withCallingHandlers(...)
3. └─NEONiso::calibrate_carbon(...) at test-gold_file_regression.R:62:5
4. └─NEONiso::ingest_data(...)
5. └─neonUtilities::stackEddy(...)
── Error ('test-gold_file_regression.R:79:3'): carbon linreg cal_df matches baseline ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso::calibrate_carbon(...) at test-gold_file_regression.R:79:3
2. └─NEONiso::ingest_data(...)
3. └─neonUtilities::stackEddy(...)
── Error ('test-gold_file_regression.R:90:3'): carbon linreg ambient matches baseline ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso::calibrate_carbon(...) at test-gold_file_regression.R:90:3
2. └─NEONiso::ingest_data(...)
3. └─neonUtilities::stackEddy(...)
── Error ('test-gold_file_regression.R:106:3'): water cal_df matches baseline ──
Error in `neonUtilities::stackEddy(inname, level = "dp01", var = "isoH2o", avg = amb_avg, useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso:::calibrate_water(fin, tempfile(), "ONAQ", write_to_file = FALSE) at test-gold_file_regression.R:106:3
2. └─NEONiso::ingest_data(inname, analyte = "H2o", amb_avg = 9, ref_avg = 3)
3. └─neonUtilities::stackEddy(...)
── Error ('test-gold_file_regression.R:115:3'): water ambient matches baseline ──
Error in `neonUtilities::stackEddy(inname, level = "dp01", var = "isoH2o", avg = amb_avg, useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso:::calibrate_water(fin, tempfile(), "ONAQ", write_to_file = FALSE) at test-gold_file_regression.R:115:3
2. └─NEONiso::ingest_data(inname, analyte = "H2o", amb_avg = 9, ref_avg = 3)
3. └─neonUtilities::stackEddy(...)
── Error ('test-hdf5_roundtrip.R:16:3'): carbon calibration output file has correct HDF5 structure ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso::calibrate_carbon(...) at test-hdf5_roundtrip.R:16:3
2. └─NEONiso::ingest_data(...)
3. └─neonUtilities::stackEddy(...)
── Error ('test-hdf5_roundtrip.R:41:3'): carbon output file has correct site attributes ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso::calibrate_carbon(...) at test-hdf5_roundtrip.R:41:3
2. └─NEONiso::ingest_data(...)
3. └─neonUtilities::stackEddy(...)
── Error ('test-hdf5_roundtrip.R:59:3'): carbon output file calData has correct dataset ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso::calibrate_carbon(...) at test-hdf5_roundtrip.R:59:3
2. └─NEONiso::ingest_data(...)
3. └─neonUtilities::stackEddy(...)
── Error ('test-hdf5_roundtrip.R:73:3'): carbon output file passes validate_output_file ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso::calibrate_carbon(...) at test-hdf5_roundtrip.R:73:3
2. └─NEONiso::ingest_data(...)
3. └─neonUtilities::stackEddy(...)
── Error ('test-hdf5_roundtrip.R:89:5'): carbon gainoffset output passes validate_output_file ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-hdf5_roundtrip.R:88:3
2. │ └─base::withCallingHandlers(...)
3. └─NEONiso::calibrate_carbon(...) at test-hdf5_roundtrip.R:89:5
4. └─NEONiso::ingest_data(...)
5. └─neonUtilities::stackEddy(...)
── Error ('test-hdf5_roundtrip.R:106:3'): water calibration output file has correct HDF5 structure ──
Error in `neonUtilities::stackEddy(inname, level = "dp01", var = "isoH2o", avg = amb_avg, useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso:::calibrate_water(fin, fout, "ONAQ", write_to_file = TRUE) at test-hdf5_roundtrip.R:106:3
2. └─NEONiso::ingest_data(inname, analyte = "H2o", amb_avg = 9, ref_avg = 3)
3. └─neonUtilities::stackEddy(...)
── Error ('test-hdf5_roundtrip.R:126:3'): water output file has correct site attributes ──
Error in `neonUtilities::stackEddy(inname, level = "dp01", var = "isoH2o", avg = amb_avg, useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso:::calibrate_water(fin, fout, "ONAQ", write_to_file = TRUE) at test-hdf5_roundtrip.R:126:3
2. └─NEONiso::ingest_data(inname, analyte = "H2o", amb_avg = 9, ref_avg = 3)
3. └─neonUtilities::stackEddy(...)
── Error ('test-hdf5_roundtrip.R:140:3'): water output file passes validate_output_file ──
Error in `neonUtilities::stackEddy(inname, level = "dp01", var = "isoH2o", avg = amb_avg, useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso:::calibrate_water(fin, fout, "ONAQ", write_to_file = TRUE) at test-hdf5_roundtrip.R:140:3
2. └─NEONiso::ingest_data(inname, analyte = "H2o", amb_avg = 9, ref_avg = 3)
3. └─neonUtilities::stackEddy(...)
── Error ('test-hdf5_roundtrip.R:154:3'): write_carbon_calibration_data works standalone (fid = NULL) ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso::calibrate_carbon(...) at test-hdf5_roundtrip.R:154:3
2. └─NEONiso::ingest_data(...)
3. └─neonUtilities::stackEddy(...)
── Error ('test-hdf5_roundtrip.R:178:3'): write_carbon_ambient_data works standalone (fid = NULL) ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso::calibrate_carbon(...) at test-hdf5_roundtrip.R:178:3
2. └─NEONiso::ingest_data(...)
3. └─neonUtilities::stackEddy(...)
── Error ('test-hdf5_roundtrip.R:200:3'): write_water_calibration_data works standalone (fid = NULL) ──
Error in `neonUtilities::stackEddy(inname, level = "dp01", var = "isoH2o", avg = amb_avg, useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso:::calibrate_water(fin, fout, "ONAQ", write_to_file = FALSE) at test-hdf5_roundtrip.R:200:3
2. └─NEONiso::ingest_data(inname, analyte = "H2o", amb_avg = 9, ref_avg = 3)
3. └─neonUtilities::stackEddy(...)
── Error ('test-hdf5_roundtrip.R:217:3'): write_water_ambient_data works standalone (fid = NULL) ──
Error in `neonUtilities::stackEddy(inname, level = "dp01", var = "isoH2o", avg = amb_avg, useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso:::calibrate_water(fin, fout, "ONAQ", write_to_file = FALSE) at test-hdf5_roundtrip.R:217:3
2. └─NEONiso::ingest_data(inname, analyte = "H2o", amb_avg = 9, ref_avg = 3)
3. └─neonUtilities::stackEddy(...)
── Error ('test-hdf5_roundtrip.R:242:3'): validate_output_file errors on incomplete output file ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso::calibrate_carbon(...) at test-hdf5_roundtrip.R:242:3
2. └─NEONiso::ingest_data(...)
3. └─neonUtilities::stackEddy(...)
── Failure ('test-high_level_functions.R:25:3'): calibrate_carbon returns no error ──
Expected `calibrate_carbon(...)` not to throw any errors.
Actually got a <simpleError> with message:
Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
── Failure ('test-high_level_functions.R:37:3'): calibrate_carbon returns no error ──
Expected `calibrate_carbon(...)` not to throw any errors.
Actually got a <simpleError> with message:
Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
── Failure ('test-high_level_functions.R:50:3'): calibrate_carbon returns no error ──
Expected `calibrate_carbon(...)` not to throw any errors.
Actually got a <simpleError> with message:
Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
── Error ('test-high_level_functions.R:62:3'): calibrate_carbon returns no error ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. ├─testthat::expect_warning(...) at test-high_level_functions.R:62:3
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─NEONiso::calibrate_carbon(...)
8. └─NEONiso::ingest_data(...)
9. └─neonUtilities::stackEddy(...)
── Failure ('test-high_level_functions.R:79:3'): calibrate_water returns no error ──
Expected `calibrate_water(...)` not to throw any errors.
Actually got a <simpleError> with message:
Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
── Failure ('test-high_level_functions.R:83:3'): calibrate_water returns no error ──
Expected `calibrate_water(...)` not to throw any errors.
Actually got a <simpleError> with message:
Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
── Error ('test-output_values.R:11:1'): (code run outside of `test_that()`) ────
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso:::ingest_data(fin, analyte = "Co2", ref_avg = 9, amb_avg = 9) at test-output_values.R:11:1
2. └─neonUtilities::stackEddy(...)
── Error ('test-regression_snapshots.R:18:5'): calibrate_carbon gainoffset produces stable calibration parameters ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-regression_snapshots.R:17:3
2. │ └─base::withCallingHandlers(...)
3. └─NEONiso::calibrate_carbon(...) at test-regression_snapshots.R:18:5
4. └─NEONiso::ingest_data(...)
5. └─neonUtilities::stackEddy(...)
── Error ('test-regression_snapshots.R:46:5'): calibrate_carbon gainoffset produces stable ambient d13C values ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. ├─base::suppressWarnings(...) at test-regression_snapshots.R:45:3
2. │ └─base::withCallingHandlers(...)
3. └─NEONiso::calibrate_carbon(...) at test-regression_snapshots.R:46:5
4. └─NEONiso::ingest_data(...)
5. └─neonUtilities::stackEddy(...)
── Error ('test-regression_snapshots.R:66:3'): calibrate_carbon linreg produces stable calibration parameters ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso::calibrate_carbon(...) at test-regression_snapshots.R:66:3
2. └─NEONiso::ingest_data(...)
3. └─neonUtilities::stackEddy(...)
── Error ('test-regression_snapshots.R:92:3'): calibrate_carbon linreg produces stable ambient d13C values ──
Error in `neonUtilities::stackEddy(inname, avg = 9, level = "dp01", var = "isoCo2", useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso::calibrate_carbon(...) at test-regression_snapshots.R:92:3
2. └─NEONiso::ingest_data(...)
3. └─neonUtilities::stackEddy(...)
── Error ('test-regression_snapshots.R:111:3'): calibrate_water produces stable calibration parameters ──
Error in `neonUtilities::stackEddy(inname, level = "dp01", var = "isoH2o", avg = amb_avg, useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso:::calibrate_water(fin, tempfile(), "ONAQ", write_to_file = FALSE) at test-regression_snapshots.R:111:3
2. └─NEONiso::ingest_data(inname, analyte = "H2o", amb_avg = 9, ref_avg = 3)
3. └─neonUtilities::stackEddy(...)
── Error ('test-regression_snapshots.R:133:3'): calibrate_water produces stable ambient isotope values ──
Error in `neonUtilities::stackEddy(inname, level = "dp01", var = "isoH2o", avg = amb_avg, useFasttime = TRUE, runLocal = TRUE)`: Package rhdf5 is required for this function to work.
rhdf5 is a Bioconductor package. To install, use:
install.packages('BiocManager')
BiocManager::install('rhdf5')
Backtrace:
▆
1. └─NEONiso:::calibrate_water(fin, tempfile(), "ONAQ", write_to_file = FALSE) at test-regression_snapshots.R:133:3
2. └─NEONiso::ingest_data(inname, analyte = "H2o", amb_avg = 9, ref_avg = 3)
3. └─neonUtilities::stackEddy(...)
[ FAIL 35 | WARN 0 | SKIP 0 | PASS 60 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang