Last updated on 2026-04-28 08:53:50 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.4 | 70.93 | 662.26 | 733.19 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.4 | 46.38 | 496.90 | 543.28 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.4 | 138.00 | 1110.46 | 1248.46 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.4 | 141.00 | 1128.53 | 1269.53 | OK | |
| r-devel-windows-x86_64 | 1.0.4 | 82.00 | 562.00 | 644.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.4 | 68.29 | 645.28 | 713.57 | OK | |
| r-release-linux-x86_64 | 1.0.4 | 70.55 | 622.64 | 693.19 | OK | |
| r-release-macos-arm64 | 1.0.4 | 4.00 | ERROR | |||
| r-release-macos-x86_64 | 1.0.4 | 11.00 | ERROR | |||
| r-release-windows-x86_64 | 1.0.4 | 76.00 | 628.00 | 704.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.4 | 4.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0.4 | 9.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.0.4 | 107.00 | 792.00 | 899.00 | OK |
Version: 1.0.4
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'TmCalculator.Rmd' using rmarkdown
Quitting from TmCalculator.Rmd:125-181 [tm_viz]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.XMLInternalDocument`:
! No method for subsetting an XMLInternalDocument with numeric
---
Backtrace:
▆
1. └─TmCalculator::plot_tm_genome_tracks(...)
2. └─TmCalculator (local) create_chr_plot(chromosome_to_plot)
3. └─Gviz::IdeogramTrack(genome = genome_assembly, chromosome = chr)
4. └─methods::new(...)
5. ├─methods::initialize(value, ...)
6. └─Gviz::initialize(value, ...)
7. └─Gviz (local) .local(.Object, ...)
8. └─Gviz:::.cacheGenomes(genome = genome)
9. └─Gviz::.doCache(...)
10. ├─BiocGenerics::eval(expression, envir = callEnv)
11. ├─base::eval(expression, envir = callEnv)
12. │ └─base::eval(expression, envir = callEnv)
13. └─rtracklayer::ucscGenomes()
14. ├─response[[5]]
15. └─XML:::`[[.XMLInternalDocument`(response, 5)
16. ├─x[i, addFinalizer = addFinalizer]
17. └─XML:::`[.XMLInternalDocument`(x, i, addFinalizer = addFinalizer)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'TmCalculator.Rmd' failed with diagnostics:
No method for subsetting an XMLInternalDocument with numeric
--- failed re-building 'TmCalculator.Rmd'
SUMMARY: processing the following file failed:
'TmCalculator.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.0.4
Check: package dependencies
Result: ERROR
Package required but not available: ‘karyoploteR’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 1.0.4
Check: package dependencies
Result: ERROR
Packages required but not available: 'ggbio', 'karyoploteR'
Package suggested but not available for checking: ‘BSgenome.Hsapiens.UCSC.hg38’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64