Last updated on 2024-06-19 20:58:22 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 6.06 | 234.16 | 240.22 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 5.39 | 182.78 | 188.17 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.0 | 366.11 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 332.09 | OK | |||
| r-devel-windows-x86_64 | 1.0.0 | 9.00 | 182.00 | 191.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 8.64 | 225.07 | 233.71 | ERROR | |
| r-release-linux-x86_64 | 1.0.0 | 5.95 | 225.83 | 231.78 | ERROR | |
| r-release-macos-arm64 | 1.0.0 | 75.00 | OK | |||
| r-release-macos-x86_64 | 1.0.0 | 115.00 | OK | |||
| r-release-windows-x86_64 | 1.0.0 | 8.00 | 141.00 | 149.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | 104.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1.0 | 167.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 11.00 | 229.00 | 240.00 | ERROR |
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘admiralonco.Rmd’ using rmarkdown
--- finished re-building ‘admiralonco.Rmd’
--- re-building ‘adrs.Rmd’ using rmarkdown
--- finished re-building ‘adrs.Rmd’
--- re-building ‘adrs_basic.Rmd’ using rmarkdown
--- finished re-building ‘adrs_basic.Rmd’
--- re-building ‘adtr.Rmd’ using rmarkdown
--- finished re-building ‘adtr.Rmd’
--- re-building ‘adtte.Rmd’ using rmarkdown
--- finished re-building ‘adtte.Rmd’
--- re-building ‘irecist.Rmd’ using rmarkdown
Quitting from lines 547-568 [unnamed-chunk-24] (irecist.Rmd)
Error: processing vignette 'irecist.Rmd' failed with diagnostics:
Argument `cnd_type` must be equal to one of "message", "warning", or
"error".
--- failed re-building ‘irecist.Rmd’
--- re-building ‘nactdt.Rmd’ using rmarkdown
--- finished re-building ‘nactdt.Rmd’
SUMMARY: processing the following file failed:
‘irecist.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-patched-linux-x86_64, r-release-linux-x86_64
Version: 1.1.0
Check: examples
Result: ERROR
Running examples in ‘admiralonco-Ex.R’ failed
The error most likely occurred in:
> ### Name: rsp_y
> ### Title: Pre-Defined Response Event Objects
> ### Aliases: rsp_y no_data_n cb_y bor_cr bor_pr bor_sd bor_non_crpd bor_pd
> ### bor_ne no_data_missing crsp_y_cr crsp_y_pr cbor_cr cbor_pr
> ### Keywords: source_specifications
>
> ### ** Examples
>
> # This shows the definition of all pre-defined `event` objects that ship
> # with {admiralonco}
> exports <- sort(getNamespaceExports("admiralonco"))
> for (obj_name in exports) {
+ obj <- getExportedValue("admiralonco", obj_name)
+ if (inherits(obj, "event_def")) {
+ cat("\n", obj_name, ":\n", sep = "")
+ print(obj, indent = 2)
+ }
+ }
bor_cr:
<event> object
description: "Define complete response (CR) for best overall response (BOR)"
dataset_name: "ovr"
condition: AVALC == "CR"
mode: NULL
order: NULL
set_values_to:
Error in is_named(list[[name]]) : could not find function "is_named"
Calls: print -> print.source -> print_named_list
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 1.1.0
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘adrs.Rmd’
...
+ case_when(arg == "NE" ~ 1, arg == "CR" ~ 2, arg == "PR" ~
+ 3, arg == "SD" ~ 4, arg == "NON-CR/NON-PD" .... [TRUNCATED]
> adrs <- adrs %>% restrict_derivation(derivation = derive_var_extreme_flag,
+ args = params(by_vars = c(get_admiral_option("subject_keys"),
+ .... [TRUNCATED]
When sourcing ‘adrs.R’:
Error: could not find function "is_named"
Execution halted
when running code in ‘adrs_basic.Rmd’
...
+ case_when(arg == "NE" ~ 1, arg == "CR" ~ 2, arg == "PR" ~
+ 3, arg == "SD" ~ 4, arg == "NON-CR/NON-PD" .... [TRUNCATED]
> adrs <- adrs %>% restrict_derivation(derivation = derive_var_extreme_flag,
+ args = params(by_vars = c(get_admiral_option("subject_keys"),
+ .... [TRUNCATED]
When sourcing ‘adrs_basic.R’:
Error: could not find function "is_named"
Execution halted
when running code in ‘adrs_imwg.Rmd’
...
> if (nrow(many_nes) > 0) {
+ cli_warn("There are subjects with more than three NEs in a row.")
+ }
> adrs_imwg <- adrs_imwg %>% restrict_derivation(derivation = derive_var_extreme_flag,
+ args = params(by_vars = exprs(!!!get_admiral_option("sub ..." ... [TRUNCATED]
When sourcing ‘adrs_imwg.R’:
Error: could not find function "is_named"
Execution halted
when running code in ‘adtr.Rmd’
...
> adtr_sum <- adtr_sum %>% derive_var_merged_summary(dataset_add = adtr,
+ by_vars = get_admiral_option("subject_keys"), filter_add = AVISIT ==
.... [TRUNCATED]
> adtr_sum <- adtr_sum %>% restrict_derivation(derivation = derive_var_extreme_flag,
+ args = params(by_vars = get_admiral_option("subject_keys") .... [TRUNCATED]
When sourcing ‘adtr.R’:
Error: could not find function "is_named"
Execution halted
when running code in ‘irecist.Rmd’
...
|01-701-1115 |WEEK 6 |OVR |Overall Response by Investigator |iUPD |iUPD | 2|
|01-701-1118 |WEEK 6 |OVR |Overall Response by Investigator |iUPD |iUPD | 2|
> adrs <- adrs %>% restrict_derivation(derivation = derive_var_extreme_flag,
+ args = params(by_vars = c(get_admiral_option("subject_keys"),
+ .... [TRUNCATED]
When sourcing ‘irecist.R’:
Error: could not find function "is_named"
Execution halted
‘admiralonco.Rmd’ using ‘UTF-8’... [1s/1s] OK
‘adrs.Rmd’ using ‘UTF-8’... failed
‘adrs_basic.Rmd’ using ‘UTF-8’... failed
‘adrs_imwg.Rmd’ using ‘UTF-8’... failed
‘adtr.Rmd’ using ‘UTF-8’... failed
‘adtte.Rmd’ using ‘UTF-8’... [4s/4s] OK
‘irecist.Rmd’ using ‘UTF-8’... failed
‘nactdt.Rmd’ using ‘UTF-8’... [2s/2s] OK
Flavor: r-oldrel-macos-x86_64
Version: 1.1.0
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
--- re-building ‘admiralonco.Rmd’ using rmarkdown
--- finished re-building ‘admiralonco.Rmd’
--- re-building ‘adrs.Rmd’ using rmarkdown
Quitting from lines 233-256 [unnamed-chunk-11] (adrs.Rmd)
Error: processing vignette 'adrs.Rmd' failed with diagnostics:
could not find function "is_named"
--- failed re-building ‘adrs.Rmd’
--- re-building ‘adrs_basic.Rmd’ using rmarkdown
Quitting from lines 232-255 [unnamed-chunk-11] (adrs_basic.Rmd)
Error: processing vignette 'adrs_basic.Rmd' failed with diagnostics:
could not find function "is_named"
--- failed re-building ‘adrs_basic.Rmd’
--- re-building ‘adrs_imwg.Rmd’ using rmarkdown
Quitting from lines 558-569 [unnamed-chunk-17] (adrs_imwg.Rmd)
Error: processing vignette 'adrs_imwg.Rmd' failed with diagnostics:
could not find function "is_named"
--- failed re-building ‘adrs_imwg.Rmd’
--- re-building ‘adtr.Rmd’ using rmarkdown
Quitting from lines 355-369 [unnamed-chunk-16] (adtr.Rmd)
Error: processing vignette 'adtr.Rmd' failed with diagnostics:
could not find function "is_named"
--- failed re-building ‘adtr.Rmd’
--- re-building ‘adtte.Rmd’ using rmarkdown
--- finished re-building ‘adtte.Rmd’
--- re-building ‘irecist.Rmd’ using rmarkdown
Quitting from lines 243-254 [unnamed-chunk-11] (irecist.Rmd)
Error: processing vignette 'irecist.Rmd' failed with diagnostics:
could not find function "is_named"
--- failed re-building ‘irecist.Rmd’
--- re-building ‘nactdt.Rmd’ using rmarkdown
--- finished re-building ‘nactdt.Rmd’
SUMMARY: processing the following files failed:
‘adrs.Rmd’ ‘adrs_basic.Rmd’ ‘adrs_imwg.Rmd’ ‘adtr.Rmd’ ‘irecist.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building 'admiralonco.Rmd' using rmarkdown
--- finished re-building 'admiralonco.Rmd'
--- re-building 'adrs.Rmd' using rmarkdown
--- finished re-building 'adrs.Rmd'
--- re-building 'adrs_basic.Rmd' using rmarkdown
--- finished re-building 'adrs_basic.Rmd'
--- re-building 'adtr.Rmd' using rmarkdown
--- finished re-building 'adtr.Rmd'
--- re-building 'adtte.Rmd' using rmarkdown
--- finished re-building 'adtte.Rmd'
--- re-building 'irecist.Rmd' using rmarkdown
Quitting from lines 547-568 [unnamed-chunk-24] (irecist.Rmd)
Error: processing vignette 'irecist.Rmd' failed with diagnostics:
Argument `cnd_type` must be equal to one of "message", "warning", or
"error".
--- failed re-building 'irecist.Rmd'
--- re-building 'nactdt.Rmd' using rmarkdown
--- finished re-building 'nactdt.Rmd'
SUMMARY: processing the following file failed:
'irecist.Rmd'
Error: Vignette re-building failed.
Execution halted
Flavor: r-oldrel-windows-x86_64