Last updated on 2025-12-21 15:50:57 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.2.0 | 2.97 | 45.84 | 48.81 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.2.0 | 2.30 | 36.50 | 38.80 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.2.0 | 5.00 | 62.46 | 67.46 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.2.0 | 5.00 | 76.67 | 81.67 | ERROR | |
| r-devel-windows-x86_64 | 0.2.0 | 4.00 | 60.00 | 64.00 | OK | |
| r-patched-linux-x86_64 | 0.2.0 | 2.58 | 50.21 | 52.79 | OK | |
| r-release-linux-x86_64 | 0.2.0 | 2.96 | 52.69 | 55.65 | OK | |
| r-release-macos-arm64 | 0.2.0 | OK | ||||
| r-release-macos-x86_64 | 0.2.0 | 2.00 | 55.00 | 57.00 | OK | |
| r-release-windows-x86_64 | 0.2.0 | 4.00 | 58.00 | 62.00 | OK | |
| r-oldrel-macos-arm64 | 0.2.0 | OK | ||||
| r-oldrel-macos-x86_64 | 0.2.0 | 2.00 | 44.00 | 46.00 | OK | |
| r-oldrel-windows-x86_64 | 0.2.0 | 6.00 | 70.00 | 76.00 | OK |
Version: 0.2.0
Check: examples
Result: ERROR
Running examples in ‘constellation-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: incidents
> ### Title: Identify incident events separated by a minimum time window
> ### Aliases: incidents
>
> ### ** Examples
>
> library(data.table)
Attaching package: ‘data.table’
The following object is masked from ‘package:base’:
%notin%
> systolic_bp <- as.data.table(vitals[VARIABLE == "SYSTOLIC_BP"])
> systolic_bp[, RECORDED_TIME := as.POSIXct(RECORDED_TIME,
+ format = "%Y-%m-%dT%H:%M:%SZ", tz = "UTC")]
>
> # Identify systolic blood pressure measurements for each patient that are
> # separated by at least 24 hours
> incidents(systolic_bp, window_hours = 24, join_key = "PAT_ID",
+ time_var = "RECORDED_TIME")
Error in `[.data.table`(data, , `:=`(KEEP, get(time_var) >= (get(time_var)[1] + :
attempt access index 4/4 in VECTOR_ELT
Calls: incidents -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(constellation)
>
> test_check("constellation")
Saving _problems/test-incidents-47.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 107 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-incidents.R:45:3'): incidents produces expected values for test patient ──
Error in ``[.data.table`(data, , `:=`(KEEP, get(time_var) >= (get(time_var)[1] + window_hours * 60 * 60)), by = join_key)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-incidents.R:45:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─constellation::incidents(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 107 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.2.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘identify_sepsis.Rmd’ using rmarkdown
Quitting from identify_sepsis.Rmd:169-173 [sepsis_incidents]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 2/2 in VECTOR_ELT
---
Backtrace:
▆
1. └─constellation::incidents(...)
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'identify_sepsis.Rmd' failed with diagnostics:
attempt access index 2/2 in VECTOR_ELT
--- failed re-building ‘identify_sepsis.Rmd’
SUMMARY: processing the following file failed:
‘identify_sepsis.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(constellation)
>
> test_check("constellation")
Saving _problems/test-incidents-47.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 107 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-incidents.R:45:3'): incidents produces expected values for test patient ──
Error in ``[.data.table`(data, , `:=`(KEEP, get(time_var) >= (get(time_var)[1] + window_hours * 60 * 60)), by = join_key)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-incidents.R:45:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─constellation::incidents(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 107 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.2.0
Check: examples
Result: ERROR
Running examples in ‘constellation-Ex.R’ failed
The error most likely occurred in:
> ### Name: incidents
> ### Title: Identify incident events separated by a minimum time window
> ### Aliases: incidents
>
> ### ** Examples
>
> library(data.table)
Attaching package: ‘data.table’
The following object is masked from ‘package:base’:
%notin%
> systolic_bp <- as.data.table(vitals[VARIABLE == "SYSTOLIC_BP"])
> systolic_bp[, RECORDED_TIME := as.POSIXct(RECORDED_TIME,
+ format = "%Y-%m-%dT%H:%M:%SZ", tz = "UTC")]
>
> # Identify systolic blood pressure measurements for each patient that are
> # separated by at least 24 hours
> incidents(systolic_bp, window_hours = 24, join_key = "PAT_ID",
+ time_var = "RECORDED_TIME")
Error in `[.data.table`(data, , `:=`(KEEP, get(time_var) >= (get(time_var)[1] + :
attempt access index 4/4 in VECTOR_ELT
Calls: incidents -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(constellation)
>
> test_check("constellation")
Saving _problems/test-incidents-47.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 107 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-incidents.R:45:3'): incidents produces expected values for test patient ──
Error in ``[.data.table`(data, , `:=`(KEEP, get(time_var) >= (get(time_var)[1] + window_hours * 60 * 60)), by = join_key)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-incidents.R:45:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─constellation::incidents(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 107 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.2.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘identify_sepsis.Rmd’ using rmarkdown
Quitting from identify_sepsis.Rmd:169-173 [sepsis_incidents]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 2/2 in VECTOR_ELT
---
Backtrace:
▆
1. └─constellation::incidents(...)
2. ├─...[]
3. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'identify_sepsis.Rmd' failed with diagnostics:
attempt access index 2/2 in VECTOR_ELT
--- failed re-building ‘identify_sepsis.Rmd’
SUMMARY: processing the following file failed:
‘identify_sepsis.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [6s/14s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(constellation)
>
> test_check("constellation")
Saving _problems/test-incidents-47.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 107 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-incidents.R:45:3'): incidents produces expected values for test patient ──
Error in ``[.data.table`(data, , `:=`(KEEP, get(time_var) >= (get(time_var)[1] + window_hours * 60 * 60)), by = join_key)`: attempt access index 4/4 in VECTOR_ELT
Backtrace:
▆
1. ├─testthat::expect_equal(...) at test-incidents.R:45:3
2. │ └─testthat::quasi_label(enquo(object), label)
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─constellation::incidents(...)
5. ├─...[]
6. └─data.table:::`[.data.table`(...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 107 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc