Last updated on 2025-04-28 00:50:21 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 11.53 | 101.37 | 112.90 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 8.05 | 70.82 | 78.87 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 182.25 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 170.44 | OK | |||
| r-devel-windows-x86_64 | 1.0.0 | 15.00 | 103.00 | 118.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0.0 | 11.40 | 101.17 | 112.57 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 10.58 | 100.25 | 110.83 | OK | |
| r-release-macos-arm64 | 1.0.0 | 49.00 | OK | |||
| r-release-macos-x86_64 | 1.0.0 | 99.00 | OK | |||
| r-release-windows-x86_64 | 1.0.0 | 13.00 | 107.00 | 120.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | 55.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.0 | 103.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 17.00 | 139.00 | 156.00 | OK |
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in 'fishboot-Ex.R' failed
The error most likely occurred in:
> ### Name: grotag_boot
> ### Title: Bootstrapped tag-and-recapture growth analysis
> ### Aliases: grotag_boot
>
> ### ** Examples
>
> # Load example DB from fishmethods package
> data(bonito, package = "fishmethods")
>
> # Run the example cited on ?grotag
> fishmethods::grotag(L1 = bonito$L1,
+ L2 = bonito$L2,
+ T1 = bonito$T1,
+ T2 = bonito$T2,
+ alpha = 35, beta = 55,
+ design = list(nu = 1, m = 1,p = 1, sea = 1),
+ stvalue = list(sigma = 0.9, nu = 0.4, m = -1, p = 0.2, u = 0.4, w = 0.4),
+ upper = list(sigma = 5, nu = 1, m = 2, p = 0.5, u = 1, w = 1),
+ lower = list(sigma = 0, nu = 0, m = -2, p = 0.0, u = 0, w = 0),
+ control = list(maxit = 1e4))
$table
Estimate SE
Parameters NA NA
Mean growth rates ga 11.000 0.7900
Mean growth rates gb 7.480 0.8900
Seasonal variation u 0.660 0.1280
w 0.653 0.0230
Growth variability nu 0.353 0.0570
Measurement error s 0.757 0.0720
m -0.725 0.1100
Outliers p 0.000 0.1061
NA NA
-Log likelihood 205.300 NA
AIC 426.700 NA
$VBparms
Estimate
Parameters NA
Linf 97.5124180
K 0.1935571
$correlation
[,1] [,2] [,3] [,4] [,5] [,6]
[1,] 1.000000000 0.35142057 0.005507865 -0.36432847 -0.604872472 -0.07619602
[2,] 0.351420572 1.00000000 0.028362210 -0.25786764 -0.385221032 -0.01109868
[3,] 0.005507865 0.02836221 1.000000000 -0.34337800 0.009500816 -0.17215199
[4,] -0.364328468 -0.25786764 -0.343378003 1.00000000 0.256739157 -0.17737094
[5,] -0.604872472 -0.38522103 0.009500816 0.25673916 1.000000000 0.05372803
[6,] -0.076196022 -0.01109868 -0.172151990 -0.17737094 0.053728029 1.00000000
[7,] -0.079941392 -0.24182777 -0.072780845 0.02018474 -0.120394915 0.07908529
[8,] -0.370729488 -0.09370618 0.060163152 -0.04358250 0.070311966 0.03322343
[,7] [,8]
[1,] -0.07994139 -0.37072949
[2,] -0.24182777 -0.09370618
[3,] -0.07278085 0.06016315
[4,] 0.02018474 -0.04358250
[5,] -0.12039491 0.07031197
[6,] 0.07908529 0.03322343
[7,] 1.00000000 0.08063131
[8,] 0.08063131 1.00000000
$predicted
[1] 1.97457439 0.10992873 0.41543489 0.29020908 0.30618026 1.97605213
[7] 0.38277006 0.90961597 1.05288444 1.77439946 7.30682595 0.03561397
[13] 0.45950177 1.74247435 5.61893030 0.57347442 1.30490339 0.93631884
[19] 0.72806299 0.61180153 0.30261540 0.69203447 2.05188047 1.28761018
[25] 0.37081121 0.27662086 1.34304234 0.76119043 0.54475994 0.53100527
[31] 0.51560200 0.69428371 5.00175273 6.03624282 4.51531168 1.69452606
[37] 0.88381462 2.14902148 3.77081611 5.02834862 1.91286462 0.06615485
[43] 0.38922058 2.85676118 4.51531168 6.90915901 0.57753532 0.83032382
[49] 3.00423165 0.65546917 0.35268359 0.62243210 0.42144674 0.35814150
[55] 0.44927131 0.72740612 0.64430964 0.90989742 5.22461174 0.90416343
[61] 2.50738211 0.96204316 0.22263271 0.25598441 0.00000000 0.05450419
[67] 0.05974373 0.38627305 1.95046021 0.36385288 0.46196224 1.58043551
[73] 1.80258632 0.01710753 0.23715736 21.65836812 3.08502729 8.51415841
[79] 2.31533881 9.07016119 8.76800126 5.19532660 2.87854260 4.36974960
[85] 10.21014295 2.98690497 0.10188413 3.98153413 0.38922058 0.27356639
[91] 4.89447053 4.52531203 0.30111623 1.96582395 1.45559951 1.25792723
[97] 0.52971460 1.19968255 3.12938937 1.07045825 2.39897864 1.32776555
[103] 2.01931649 0.69947219 0.81984407 1.08408602 0.70242508 1.90555154
[109] 0.56928103 0.85294911 1.74266819 0.33822725 0.60252835 0.55234901
[115] 1.05664969 1.35661103 3.02621100 0.97621827 2.64676411 3.61107336
[121] 0.22123384 0.11469325 0.12199900 10.14258353 8.63571445 5.86162714
[127] 3.96978042 3.63203455 2.11552554 4.77659134 3.81884665 4.40954547
[133] 3.64240061 1.76478435 2.55318487 4.40428582 3.24706241 2.36671528
$residuals
[1] 1.725425612 0.090071275 -1.615434889 -0.290209083 -0.306180256
[6] -0.876052132 -0.382770055 -0.809615966 -0.252884443 -1.374399465
[11] -3.006825948 -1.735613973 -0.059501771 0.057525647 -0.418930305
[16] -1.873474418 0.395096606 -1.436318839 -1.128062987 -1.711801530
[21] -0.602615405 -1.692034475 -1.351880466 -3.187610182 -1.170811209
[26] -1.776620864 -0.943042343 -1.261190432 -0.444759942 -0.631005267
[31] -1.415602000 -0.294283715 0.598247271 1.263757175 3.184688323
[36] 0.305473936 -1.683814621 -1.049021479 1.229183890 -0.428348620
[41] -0.812864615 -0.066154849 0.010779418 -1.656761185 -2.015311677
[46] -1.609159010 -1.277535322 -1.530323824 1.795768348 -1.755469166
[51] -0.352683595 -0.622432095 -1.621446738 -0.558141498 -2.549271311
[56] -1.427406118 -1.944309637 -1.809897423 -1.124611744 -0.804163429
[61] -0.507382111 -0.962043165 -1.022632711 -0.855984406 -1.000000000
[66] -0.054504189 -0.059743725 -0.186273055 -1.450460212 -1.363852884
[71] -0.461962245 -1.880435506 -1.302586320 -1.517107534 -0.037157363
[76] 6.941631883 0.414972711 -6.214158407 -0.815338809 -2.870161186
[81] -6.568001255 -1.495326604 1.921457399 -0.469749600 1.389857052
[86] 1.213095028 -0.001884130 -1.481534126 0.010779418 0.726433611
[91] -1.394470532 -2.125312027 -0.101116234 -1.765823950 1.044400491
[96] -1.057927227 -1.329714598 -0.899682554 -1.929389374 0.429541745
[101] -0.398978643 -1.027765552 -1.219316495 0.500527805 -0.119844070
[106] 0.815913980 -0.402425083 -1.905551543 0.030718965 -0.852949112
[111] -1.242668189 -0.038227248 -0.202528350 -0.752349012 -1.856649688
[116] -0.756611027 -2.226210998 -1.976218271 -0.346764105 -1.511073356
[121] -0.421233843 0.385306753 -0.321999001 0.057416467 3.464285555
[126] -4.061627138 -1.469780425 0.867965449 -0.115525539 -1.376591342
[131] -1.318846655 -0.609545466 -1.242400609 1.335215645 -0.653184874
[136] -0.004285816 -0.547062409 1.433284718
>
> # Run the example using grotag_boot
> res <- grotag_boot(L1 = bonito$L1,
+ L2 = bonito$L2,
+ T1 = bonito$T1,
+ T2 = bonito$T2,
+ alpha = 35, beta = 55,
+ design = list(nu = 1, m = 1,p = 1, sea = 1),
+ stvalue = list(sigma = 0.9, nu = 0.4, m = -1, p = 0.2, u = 0.4, w = 0.4),
+ upper = list(sigma = 5, nu = 1, m = 2, p = 0.5, u = 1, w = 1),
+ lower = list(sigma = 0, nu = 0, m = -2, p = 0.0, u = 0, w = 0),
+ control = list(maxit = 1e4),
+ nresamp = 3, na_action = "narm")
Error in names(x) <- value :
'names' attribute [7] must be the same length as the vector [0]
Calls: grotag_boot -> colnames<-
Execution halted
Flavor: r-devel-windows-x86_64