Last updated on 2025-03-15 18:50:00 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.9.1 | 60.42 | 331.27 | 391.69 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 0.9.1 | 0.43 | 1.37 | 1.80 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.9.1 | 628.91 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.9.1 | 570.84 | OK | |||
| r-devel-macos-arm64 | 0.9.1 | 190.00 | OK | |||
| r-devel-macos-x86_64 | 0.9.1 | 321.00 | OK | |||
| r-devel-windows-x86_64 | 0.9.1 | 62.00 | 320.00 | 382.00 | NOTE | |
| r-patched-linux-x86_64 | 0.9.1 | 59.54 | 305.35 | 364.89 | WARN | |
| r-release-linux-x86_64 | 0.9.1 | 56.96 | 299.37 | 356.33 | OK | |
| r-release-macos-arm64 | 0.9.1 | 166.00 | NOTE | |||
| r-release-macos-x86_64 | 0.9.1 | 233.00 | NOTE | |||
| r-release-windows-x86_64 | 0.9.1 | 63.00 | 312.00 | 375.00 | NOTE | |
| r-oldrel-macos-arm64 | 0.9.1 | NOTE | ||||
| r-oldrel-macos-x86_64 | 0.9.1 | 213.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 0.9.1 | 65.00 | 407.00 | 472.00 | NOTE |
Version: 0.9.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
coding.Rd: data.table, copy_to
dbAnnotate.Rd: data.table, copy_to
geneUsage.Rd: data.table, copy_to
getKmers.Rd: data.table, copy_to
immunr_hclust.Rd: fviz_nbclust, hcut, dbscan
immunr_pca.Rd: isoMDS, Rtsne
inc_overlap.Rd: data.table, copy_to
pubRep.Rd: data.table, copy_to
repAlignLineage.Rd: data.table
repClonality.Rd: data.table, copy_to
repDiversity.Rd: data.table, copy_to
repExplore.Rd: data.table, copy_to
repGermline.Rd: data.table
repOverlap.Rd: data.table, copy_to
repSample.Rd: data.table, copy_to
select_barcodes.Rd: data.table, copy_to
seqCluster.Rd: data.table
seqDist.Rd: data.table
spectratype.Rd: data.table, copy_to
top.Rd: data.table, copy_to
trackClonotypes.Rd: data.table, copy_to
vis.immunr_gene_usage.Rd: chordDiagram
vis.immunr_hclust.Rd: fviz_dend
vis.immunr_kmeans.Rd: fviz_cluster
vis.immunr_ov_matrix.Rd: chordDiagram
vis.immunr_public_statistics.Rd: upset
vis_box.Rd: melt
vis_circos.Rd: chordDiagram
vis_hist.Rd: melt
vis_textlogo.Rd: geom_logo
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-windows-x86_64, r-patched-linux-x86_64
Version: 0.9.1
Check: whether package can be installed
Result: ERROR
Installation failed.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.9.1
Check: whether package can be installed
Result: WARN
Found the following significant warnings:
Rd warning: coding.Rd:20: missing link ‘data.table’
Rd warning: coding.Rd:26: missing link ‘copy_to’
Rd warning: dbAnnotate.Rd:11: missing link ‘data.table’
Rd warning: dbAnnotate.Rd:17: missing link ‘copy_to’
Rd warning: geneUsage.Rd:20: missing link ‘data.table’
Rd warning: geneUsage.Rd:26: missing link ‘copy_to’
Rd warning: getKmers.Rd:13: missing link ‘data.table’
Rd warning: getKmers.Rd:19: missing link ‘copy_to’
Rd warning: immunr_hclust.Rd:21: missing link ‘fviz_nbclust’
Rd warning: immunr_hclust.Rd:23: missing link ‘fviz_nbclust’
Rd warning: immunr_hclust.Rd:27: missing link ‘fviz_nbclust’
Rd warning: immunr_hclust.Rd:34: missing link ‘hcut’
Rd warning: immunr_hclust.Rd:35: missing link ‘fviz_nbclust’
Rd warning: immunr_hclust.Rd:38: missing link ‘fviz_nbclust’
Rd warning: immunr_hclust.Rd:41: missing link ‘dbscan’
Rd warning: immunr_pca.Rd:39: missing link ‘Rtsne’
Rd warning: inc_overlap.Rd:20: missing link ‘data.table’
Rd warning: inc_overlap.Rd:26: missing link ‘copy_to’
Rd warning: pubRep.Rd:20: missing link ‘data.table’
Rd warning: pubRep.Rd:26: missing link ‘copy_to’
Rd warning: repAlignLineage.Rd:10: missing link ‘data.table’
Rd warning: repClonality.Rd:25: missing link ‘data.table’
Rd warning: repClonality.Rd:31: missing link ‘copy_to’
Rd warning: repDiversity.Rd:33: missing link ‘data.table’
Rd warning: repDiversity.Rd:39: missing link ‘copy_to’
Rd warning: repExplore.Rd:16: missing link ‘data.table’
Rd warning: repExplore.Rd:22: missing link ‘copy_to’
Rd warning: repGermline.Rd:10: missing link ‘data.table’
Rd warning: repOverlap.Rd:25: missing link ‘data.table’
Rd warning: repOverlap.Rd:31: missing link ‘copy_to’
Rd warning: repSample.Rd:16: missing link ‘data.table’
Rd warning: repSample.Rd:22: missing link ‘copy_to’
Rd warning: select_barcodes.Rd:11: missing link ‘data.table’
Rd warning: select_barcodes.Rd:17: missing link ‘copy_to’
Rd warning: seqCluster.Rd:11: missing link ‘data.table’
Rd warning: seqDist.Rd:12: missing link ‘data.table’
Rd warning: spectratype.Rd:11: missing link ‘data.table’
Rd warning: spectratype.Rd:17: missing link ‘copy_to’
Rd warning: top.Rd:11: missing link ‘data.table’
Rd warning: top.Rd:17: missing link ‘copy_to’
Rd warning: trackClonotypes.Rd:11: missing link ‘data.table’
Rd warning: trackClonotypes.Rd:17: missing link ‘copy_to’
Rd warning: vis.immunr_gene_usage.Rd:32: missing link ‘chordDiagram’
Rd warning: vis.immunr_hclust.Rd:12: missing link ‘fviz_dend’
Rd warning: vis.immunr_kmeans.Rd:22: missing link ‘fviz_cluster’
Rd warning: vis.immunr_kmeans.Rd:24: missing link ‘fviz_cluster’
Rd warning: vis.immunr_kmeans.Rd:26: missing link ‘fviz_cluster’
Rd warning: vis.immunr_kmeans.Rd:28: missing link ‘fviz_cluster’
Rd warning: vis.immunr_kmeans.Rd:30: missing link ‘fviz_cluster’
Rd warning: vis.immunr_ov_matrix.Rd:27: missing link ‘chordDiagram’
Rd warning: vis.immunr_public_statistics.Rd:12: missing link ‘upset’
Rd warning: vis_box.Rd:41: missing link ‘melt’
Rd warning: vis_circos.Rd:20: missing link ‘chordDiagram’
Rd warning: vis_circos.Rd:14: missing link ‘chordDiagram’
Rd warning: vis_hist.Rd:55: missing link ‘melt’
Rd warning: vis_textlogo.Rd:23: missing link ‘geom_logo’
See ‘/home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/immunarch.Rcheck/00install.out’ for details.
* used C++ compiler: ‘g++-14 (Debian 14.2.0-17) 14.2.0’
Flavor: r-patched-linux-x86_64
Version: 0.9.1
Check: installed package size
Result: NOTE
installed size is 7.4Mb
sub-directories of 1Mb or more:
data 3.4Mb
doc 1.6Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64