Last updated on 2026-10-16 09:52:36 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.2 | 50.33 | 574.45 | 624.78 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.2 | 38.38 | 416.97 | 455.35 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 40.00 | 410.33 | 450.33 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 40.00 | 435.03 | 475.03 | OK | |
| r-devel-windows-x86_64 | 0.1.2 | 53.00 | 585.00 | 638.00 | OK | |
| r-patched-linux-x86_64 | 0.1.2 | 48.50 | 558.35 | 606.85 | OK | |
| r-release-linux-x86_64 | 0.1.2 | 44.44 | 560.94 | 605.38 | OK | |
| r-release-macos-arm64 | 0.1.2 | 14.00 | 146.00 | 160.00 | OK | |
| r-release-macos-x86_64 | 0.1.2 | 34.00 | 562.00 | 596.00 | OK | |
| r-release-windows-x86_64 | 0.1.2 | 48.00 | 473.00 | 521.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.2 | 16.00 | 123.00 | 139.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.1.2 | 33.00 | 529.00 | 562.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.1.2 | 69.00 | 674.00 | 743.00 | OK |
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [5s/5s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lisat)
> testthat::test_check("lisat")
Saving _problems/test-functions-71.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ────────
Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it.
Backtrace:
▆
1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘lisat-intro.Rmd’ using rmarkdown
Quitting from lisat-intro.Rmd:107-111 [cis_analysis]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.frame`:
! undefined columns selected
---
Backtrace:
▆
1. └─lisat::CIS(IS_raw = IS_raw, connect_distance = 50000)
2. ├─IS_raw[, c("Locus", "Chr", "nearest_gene_name")]
3. └─base::`[.data.frame`(IS_raw, , c("Locus", "Chr", "nearest_gene_name"))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'lisat-intro.Rmd' failed with diagnostics:
undefined columns selected
--- failed re-building ‘lisat-intro.Rmd’
SUMMARY: processing the following file failed:
‘lisat-intro.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [10s/11s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lisat)
> testthat::test_check("lisat")
Saving _problems/test-functions-71.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ────────
Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it.
Backtrace:
▆
1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64