Last updated on 2026-07-01 00:54:00 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.3.10 | 311.62 | 542.89 | 854.51 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.3.10 | 213.06 | 385.95 | 599.01 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.3.10 | 393.00 | 682.69 | 1075.69 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 1.3.10 | 630.00 | 984.98 | 1614.98 | ERROR | |
| r-devel-windows-x86_64 | 1.3.10 | 330.00 | 558.00 | 888.00 | OK | |
| r-patched-linux-x86_64 | 1.3.10 | 297.70 | 509.79 | 807.49 | OK | |
| r-release-linux-x86_64 | 1.3.10 | OK | ||||
| r-release-macos-arm64 | 1.3.10 | 57.00 | 96.00 | 153.00 | OK | |
| r-release-macos-x86_64 | 1.3.10 | 183.00 | 460.00 | 643.00 | OK | |
| r-release-windows-x86_64 | 1.3.10 | 348.00 | 557.00 | 905.00 | OK | |
| r-oldrel-macos-arm64 | 1.3.10 | 50.00 | 102.00 | 152.00 | OK | |
| r-oldrel-macos-x86_64 | 1.3.10 | 178.00 | 584.00 | 762.00 | OK | |
| r-oldrel-windows-x86_64 | 1.3.10 | 403.00 | 729.00 | 1132.00 | OK |
Version: 1.3.10
Check: examples
Result: ERROR
Running examples in ‘mets-Ex.R’ failed
The error most likely occurred in:
> ### Name: test_marginalMean
> ### Title: Pepe-Mori Test for Marginal Mean Comparison
> ### Aliases: test_marginalMean
>
> ### ** Examples
>
> data(bmt,package="mets")
> bmt$time <- bmt$time+runif(nrow(bmt))*0.01
> bmt$id <- 1:nrow(bmt)
> dcut(bmt) <- age.f~age
>
> fg=cifregFG(Event(time,cause)~tcell,data=bmt,cause=1)
>
> ## computing tests for difference for CIF
> pmt <- test_marginalMean(Event(time,cause)~strata(tcell)+cluster(id),data=bmt,cause=1,
+ death.code=1:2,death.code.prop=2,cens.code=0,time=40)
Warning in check_ic_mean_zero(ic_theta) :
IC does not have mean zero (max |mean|/rms = 0.11). Using lava.options(check.ic = FALSE) disables the warning globally.
Warning in estimate.default(NULL, ...) :
The 'null', 'contrast', 'type', 'back.transform', 'level' and 'var.adj' arguments of estimate.default() are deprecated and will be removed in version 1.9.3. Use summary(estimate(...), null=, contrast=, type=, transform=,level=, df=, var.adj=) instead.
Warning in estimate.default(pepe.mori, null = 0) :
The 'null', 'contrast', 'type', 'back.transform', 'level' and 'var.adj' arguments of estimate.default() are deprecated and will be removed in version 1.9.3. Use summary(estimate(...), null=, contrast=, type=, transform=,level=, df=, var.adj=) instead.
Warning in estimate.default(b, ...) :
The 'null', 'contrast', 'type', 'back.transform', 'level' and 'var.adj' arguments of estimate.default() are deprecated and will be removed in version 1.9.3. Use summary(estimate(...), null=, contrast=, type=, transform=,level=, df=, var.adj=) instead.
> summary(pmt)
Error in dimnames(x) <- dn :
length of 'dimnames' [1] not equal to array extent
Calls: summary -> summary.marginalTest -> rownames<-
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.3.10
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘basic-dutils.Rmd’ using rmarkdown
--- finished re-building ‘basic-dutils.Rmd’
--- re-building ‘binomial-family.Rmd’ using rmarkdown
--- finished re-building ‘binomial-family.Rmd’
--- re-building ‘binomial-twin.Rmd’ using rmarkdown
--- finished re-building ‘binomial-twin.Rmd’
--- re-building ‘binreg-TRS.Rmd’ using rmarkdown
--- finished re-building ‘binreg-TRS.Rmd’
--- re-building ‘binreg-ate.Rmd’ using rmarkdown
--- finished re-building ‘binreg-ate.Rmd’
--- re-building ‘binreg.Rmd’ using rmarkdown
--- finished re-building ‘binreg.Rmd’
--- re-building ‘cifreg.Rmd’ using rmarkdown
--- finished re-building ‘cifreg.Rmd’
--- re-building ‘cooking-survival-data.Rmd’ using rmarkdown
--- finished re-building ‘cooking-survival-data.Rmd’
--- re-building ‘cumulative-cost.Rmd’ using rmarkdown
--- finished re-building ‘cumulative-cost.Rmd’
--- re-building ‘glm-utility.Rmd’ using rmarkdown
--- finished re-building ‘glm-utility.Rmd’
--- re-building ‘haplo-discrete-ttp.Rmd’ using rmarkdown
--- finished re-building ‘haplo-discrete-ttp.Rmd’
--- re-building ‘interval-discrete-survival.Rmd’ using rmarkdown
--- finished re-building ‘interval-discrete-survival.Rmd’
--- re-building ‘marginal-cox.Rmd’ using rmarkdown
--- finished re-building ‘marginal-cox.Rmd’
--- re-building ‘mediation-survival.Rmd’ using rmarkdown
--- finished re-building ‘mediation-survival.Rmd’
--- re-building ‘phreg_rct.Rmd’ using rmarkdown
--- finished re-building ‘phreg_rct.Rmd’
--- re-building ‘quantitative-twin.Rmd’ using rmarkdown
--- finished re-building ‘quantitative-twin.Rmd’
--- re-building ‘recurrent-events.Rmd’ using rmarkdown
Quitting from recurrent-events.Rmd:281-289 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `dimnames(x) <- dn`:
! length of 'dimnames' [1] not equal to array extent
---
Backtrace:
▆
1. ├─base::withVisible(knit_print(x, ...))
2. ├─knitr::knit_print(x, ...)
3. └─knitr:::knit_print.default(x, ...)
4. └─knitr::normal_print(x)
5. ├─base::print(x)
6. └─mets:::print.marginalTest(x)
7. ├─base::print(summary(x), ...)
8. ├─base::summary(x)
9. └─mets:::summary.marginalTest(x)
10. └─base::`rownames<-`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'recurrent-events.Rmd' failed with diagnostics:
length of 'dimnames' [1] not equal to array extent
--- failed re-building ‘recurrent-events.Rmd’
--- re-building ‘rmst-ate.Rmd’ using rmarkdown
--- finished re-building ‘rmst-ate.Rmd’
--- re-building ‘survival-ate.Rmd’ using rmarkdown
--- finished re-building ‘survival-ate.Rmd’
--- re-building ‘time-to-event-family-studies-arev.Rmd’ using rmarkdown
--- finished re-building ‘time-to-event-family-studies-arev.Rmd’
--- re-building ‘twostage-survival.Rmd’ using rmarkdown
--- finished re-building ‘twostage-survival.Rmd’
--- re-building ‘while-alive.Rmd’ using rmarkdown
--- finished re-building ‘while-alive.Rmd’
SUMMARY: processing the following file failed:
‘recurrent-events.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc