Last updated on 2025-11-30 01:49:50 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 38.78 | 774.05 | 812.83 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 23.08 | 509.68 | 532.76 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 79.00 | 1146.40 | 1225.40 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 92.00 | 1137.53 | 1229.53 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 44.00 | 529.00 | 573.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 55.62 | 706.16 | 761.78 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 33.92 | 705.86 | 739.78 | ERROR | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 37.00 | 531.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 39.00 | 515.00 | 554.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 9.00 | 115.00 | 124.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 67.00 | 500.00 | 567.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 51.00 | 662.00 | 713.00 | ERROR |
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [427s/210s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-depr
> test_mlr_graphs_robustify.R: ecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2025-11-29 16:11:02.279489: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.28023: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.289827: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:02.309264: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:02.367778: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.368258: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.377531: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:02.397061: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:02.458491: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.459182: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.47361: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:02.517176: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:02.518342: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:02.541654: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.542128: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.555725: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:02.600298: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:02.601701: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:02.681252: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.68175: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.699243: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:02.803264: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:02.836262: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:02.836912: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:02.870789: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.07982: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:03.097722: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:03.239251: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.239693: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.24714: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.266608: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:03.2969: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.297562: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.31355: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.354947: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:03.356141: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:03.489363: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.489792: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.498733: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.517413: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:03.562348: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.564548: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.579281: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.621957: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:03.623067: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:03.71452: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.714961: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.724657: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.74558: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:03.787524: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.788173: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.801627: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.848686: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:03.849905: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:03.922364: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.92283: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:03.930304: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:03.948301: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:03.995377: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:03.996032: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.010417: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.053577: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:04.054799: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:04.130713: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:04.131173: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.152408: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.171641: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:04.218403: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 16:11:04.219074: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.235689: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.279585: embedding
> test_pipeop_isomap.R: 2025-11-29 16:11:04.280857: DONE
> test_pipeop_isomap.R: 2025-11-29 16:11:04.365453: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:04.365898: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.373423: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.392494: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:04.471998: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:04.472474: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.479881: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.498398: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 16:11:04.520849: Isomap START
> test_pipeop_isomap.R: 2025-11-29 16:11:04.521299: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 16:11:04.528664: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 16:11:04.547723: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_datefeatures.R:10:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_nearmiss.R:7:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean absolute difference: Inf')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [102s/50s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-11-27 08:14:13.750145: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:13.750402: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:13.753699: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:13.761328: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:13.774971: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:13.77513: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:13.777608: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:13.784493: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:13.791924: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 08:14:13.792117: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:13.796911: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:13.811235: embedding
> test_pipeop_isomap.R: 2025-11-27 08:14:13.811674: DONE
> test_pipeop_isomap.R: 2025-11-27 08:14:13.818565: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 08:14:13.81871: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:13.82337: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:13.839362: embedding
> test_pipeop_isomap.R: 2025-11-27 08:14:13.83971: DONE
> test_pipeop_isomap.R: 2025-11-27 08:14:13.86087: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:13.861006: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:13.865595: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:13.901263: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:13.910159: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 08:14:13.910361: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:13.919521: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.002989: embedding
> test_pipeop_isomap.R: 2025-11-27 08:14:14.011249: DONE
> test_pipeop_isomap.R: 2025-11-27 08:14:14.045079: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.045238: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.047678: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.054311: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:14.06124: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.061403: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.066118: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.081192: embedding
> test_pipeop_isomap.R: 2025-11-27 08:14:14.081717: DONE
> test_pipeop_isomap.R: 2025-11-27 08:14:14.114359: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.114524: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.117197: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.123649: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:14.134696: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.134842: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.138781: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.15326: embedding
> test_pipeop_isomap.R: 2025-11-27 08:14:14.153659: DONE
> test_pipeop_isomap.R: 2025-11-27 08:14:14.171306: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.171457: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.173866: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.180475: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:14.189437: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.189575: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.201108: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.21765: embedding
> test_pipeop_isomap.R: 2025-11-27 08:14:14.218078: DONE
> test_pipeop_isomap.R: 2025-11-27 08:14:14.236266: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.236402: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.238932: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.24557: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:14.257215: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.257436: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.262116: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.277857: embedding
> test_pipeop_isomap.R: 2025-11-27 08:14:14.278277: DONE
> test_pipeop_isomap.R: 2025-11-27 08:14:14.295471: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.295607: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.298062: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.30439: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:14.315917: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.316169: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.321002: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.33646: embedding
> test_pipeop_isomap.R: 2025-11-27 08:14:14.336917: DONE
> test_pipeop_isomap.R: 2025-11-27 08:14:14.357564: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.357729: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.360092: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.366273: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:14.392459: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.392606: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.394983: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.401805: Classical Scaling
> test_pipeop_isomap.R: 2025-11-27 08:14:14.407594: Isomap START
> test_pipeop_isomap.R: 2025-11-27 08:14:14.407739: constructing knn graph
> test_pipeop_isomap.R: 2025-11-27 08:14:14.410094: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-27 08:14:14.416576: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-deprecated").
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_classbalancing.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [301s/267s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R:
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-11-29 18:07:27.574517: Isomap START
> test_pipeop_isomap.R: 2025-11-29 18:07:27.575044: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:27.592847: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:27.639602: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 18:07:27.747162: Isomap START
> test_pipeop_isomap.R: 2025-11-29 18:07:27.747457: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:27.753655: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:27.796671: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 18:07:27.846697: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 18:07:27.847122: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:27.868993: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:27.958331: embedding
> test_pipeop_isomap.R: 2025-11-29 18:07:27.959453: DONE
> test_pipeop_isomap.R: 2025-11-29 18:07:27.992495: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 18:07:27.992802: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:28.006184: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:28.093832: embedding
> test_pipeop_isomap.R: 2025-11-29 18:07:28.094911: DONE
> test_pipeop_isomap.R: 2025-11-29 18:07:28.230448: Isomap START
> test_pipeop_isomap.R: 2025-11-29 18:07:28.23084: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:28.25867: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:28.467729: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 18:07:28.527821: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 18:07:28.528858: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:28.595303: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:29.008288: embedding
> test_pipeop_isomap.R: 2025-11-29 18:07:29.011968: DONE
> test_pipeop_isomap.R: 2025-11-29 18:07:29.211927: Isomap START
> test_pipeop_isomap.R: 2025-11-29 18:07:29.21221: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:29.249444: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:29.278426: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 18:07:29.314423: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 18:07:29.314876: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:29.341182: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:29.442872: embedding
> test_pipeop_isomap.R: 2025-11-29 18:07:29.44396: DONE
> test_pipeop_isomap.R: 2025-11-29 18:07:29.659867: Isomap START
> test_pipeop_isomap.R: 2025-11-29 18:07:29.660174: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:29.667873: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:29.701686: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 18:07:29.782472: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 18:07:29.783676: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:29.824036: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:29.896109: embedding
> test_pipeop_isomap.R: 2025-11-29 18:07:29.913013: DONE
> test_pipeop_isomap.R: 2025-11-29 18:07:30.022108: Isomap START
> test_pipeop_isomap.R: 2025-11-29 18:07:30.022418: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:30.029318: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:30.076183: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 18:07:30.128177: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 18:07:30.128638: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:30.166468: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:30.23655: embedding
> test_pipeop_isomap.R: 2025-11-29 18:07:30.237642: DONE
> test_pipeop_isomap.R: 2025-11-29 18:07:30.520772: Isomap START
> test_pipeop_isomap.R: 2025-11-29 18:07:30.521096: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:30.5283: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:30.545331: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 18:07:30.636406: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 18:07:30.636853: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:30.663654: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:30.744547: embedding
> test_pipeop_isomap.R: 2025-11-29 18:07:30.745711: DONE
> test_pipeop_isomap.R: 2025-11-29 18:07:30.839011: Isomap START
> test_pipeop_isomap.R: 2025-11-29 18:07:30.839323: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:30.85537: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:30.897172: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 18:07:30.955597: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-29 18:07:30.956026: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:30.98101: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:31.060711: embedding
> test_pipeop_isomap.R: 2025-11-29 18:07:31.061881: DONE
> test_pipeop_isomap.R: 2025-11-29 18:07:31.181253: Isomap START
> test_pipeop_isomap.R: 2025-11-29 18:07:31.181549: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:31.188192: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:31.222495: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 18:07:31.321735: Isomap START
> test_pipeop_isomap.R: 2025-11-29 18:07:31.322024: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:31.346445: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:31.370785: Classical Scaling
> test_pipeop_isomap.R: 2025-11-29 18:07:31.414049: Isomap START
> test_pipeop_isomap.R: 2025-11-29 18:07:31.414344: constructing knn graph
> test_pipeop_isomap.R: 2025-11-29 18:07:31.435764: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-29 18:07:31.463138: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [281s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R:
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2025-11-26 13:50:45.695907: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:45.696884: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:45.710179: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:45.732491: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:45.807552: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:45.808173: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:45.818855: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:45.842664: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:45.884071: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-26 13:50:45.885044: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:45.907652: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:45.951247: embedding
> test_pipeop_isomap.R: 2025-11-26 13:50:45.952517: DONE
> test_pipeop_isomap.R: 2025-11-26 13:50:45.980858: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-26 13:50:45.981483: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:46.002677: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:46.049789: embedding
> test_pipeop_isomap.R: 2025-11-26 13:50:46.051698: DONE
> test_pipeop_isomap.R: 2025-11-26 13:50:46.181007: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:46.181645: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:46.205326: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:46.3231: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:46.371513: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-26 13:50:46.372496: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:46.418498: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:46.653856: embedding
> test_pipeop_isomap.R: 2025-11-26 13:50:46.659324: DONE
> test_pipeop_isomap.R: 2025-11-26 13:50:46.880361: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:46.880998: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:46.891429: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:46.913862: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:46.95913: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-26 13:50:46.960022: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:46.979441: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:47.030732: embedding
> test_pipeop_isomap.R: 2025-11-26 13:50:47.032393: DONE
> test_pipeop_isomap.R: 2025-11-26 13:50:47.231011: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:47.231767: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:47.243887: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:47.267746: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:47.332129: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-26 13:50:47.333056: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:47.353214: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:47.403336: embedding
> test_pipeop_isomap.R: 2025-11-26 13:50:47.404976: DONE
> test_pipeop_isomap.R: 2025-11-26 13:50:47.512576: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:47.513202: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:47.524712: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:47.547002: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:47.614327: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-26 13:50:47.615233: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:47.638453: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:47.690438: embedding
> test_pipeop_isomap.R: 2025-11-26 13:50:47.692148: DONE
> test_pipeop_isomap.R: 2025-11-26 13:50:47.827575: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:47.828344: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:47.839758: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:47.859716: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:47.931758: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-26 13:50:47.932666: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:47.952211: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:48.002564: embedding
> test_pipeop_isomap.R: 2025-11-26 13:50:48.004168: DONE
> test_pipeop_isomap.R: 2025-11-26 13:50:48.113459: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:48.114096: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:48.121974: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:48.142294: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:48.207086: L-Isomap embed START
> test_pipeop_isomap.R: 2025-11-26 13:50:48.208088: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:48.227983: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:48.279734: embedding
> test_pipeop_isomap.R: 2025-11-26 13:50:48.281369: DONE
> test_pipeop_isomap.R: 2025-11-26 13:50:48.411021: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:48.411725: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:48.422387: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:48.446389: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:48.54226: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:48.54294: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:48.553976: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:48.576866: Classical Scaling
> test_pipeop_isomap.R: 2025-11-26 13:50:48.607983: Isomap START
> test_pipeop_isomap.R: 2025-11-26 13:50:48.608448: constructing knn graph
> test_pipeop_isomap.R: 2025-11-26 13:50:48.636175: calculating geodesic distances
> test_pipeop_isomap.R: 2025-11-26 13:50:48.658338: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_learnercv.R:31:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_select.R:9:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64