Last updated on 2026-02-02 01:49:01 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.10.0 | 38.44 | 819.21 | 857.65 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.10.0 | 22.69 | 520.30 | 542.99 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.10.0 | 70.00 | 1412.01 | 1482.01 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.10.0 | 67.00 | 1364.59 | 1431.59 | OK | |
| r-devel-windows-x86_64 | 0.10.0 | 40.00 | 578.00 | 618.00 | OK | |
| r-patched-linux-x86_64 | 0.10.0 | 53.83 | 752.54 | 806.37 | OK | |
| r-release-linux-x86_64 | 0.10.0 | 35.82 | 732.80 | 768.62 | OK | |
| r-release-macos-arm64 | 0.10.0 | OK | ||||
| r-release-macos-x86_64 | 0.10.0 | 26.00 | 542.00 | 568.00 | OK | |
| r-release-windows-x86_64 | 0.10.0 | 39.00 | 537.00 | 576.00 | OK | |
| r-oldrel-macos-arm64 | 0.10.0 | 8.00 | 126.00 | 134.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.10.0 | 26.00 | 694.00 | 720.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.10.0 | 54.00 | 681.00 | 735.00 | ERROR |
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [310s/155s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_isomap.R: 2026-02-01 17:24:01.04316: Isomap START
> test_pipeop_isomap.R: 2026-02-01 17:24:01.04383: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:01.051657: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:01.065764: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 17:24:01.123849: Isomap START
> test_pipeop_isomap.R: 2026-02-01 17:24:01.124255: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:01.132464: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:01.146484: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 17:24:01.165877: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-01 17:24:01.166389: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:01.17743: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:01.209797: embedding
> test_pipeop_isomap.R: 2026-02-01 17:24:01.210731: DONE
> test_pipeop_isomap.R: 2026-02-01 17:24:01.229818: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-01 17:24:01.230195: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:01.240692: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:01.273274: embedding
> test_pipeop_isomap.R: 2026-02-01 17:24:01.274263: DONE
> test_pipeop_isomap.R: 2026-02-01 17:24:01.332206: Isomap START
> test_pipeop_isomap.R: 2026-02-01 17:24:01.332572: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:01.355168: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:01.43092: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 17:24:01.461597: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-01 17:24:01.462104: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:01.482406: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:01.655544: embedding
> test_pipeop_isomap.R: 2026-02-01 17:24:01.667714: DONE
> test_pipeop_isomap.R: 2026-02-01 17:24:01.771686: Isomap START
> test_pipeop_isomap.R: 2026-02-01 17:24:01.772048: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:01.778812: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:01.791607: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 17:24:01.813016: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-01 17:24:01.81355: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:01.823726: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:01.85642: embedding
> test_pipeop_isomap.R: 2026-02-01 17:24:01.941734: DONE
> test_pipeop_isomap.R: 2026-02-01 17:24:02.047452: Isomap START
> test_pipeop_isomap.R: 2026-02-01 17:24:02.047845: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:02.053327: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:02.065779: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 17:24:02.096891: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-01 17:24:02.097398: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:02.107192: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:02.136999: embedding
> test_pipeop_isomap.R: 2026-02-01 17:24:02.137845: DONE
> test_pipeop_isomap.R: 2026-02-01 17:24:02.190933: Isomap START
> test_pipeop_isomap.R: 2026-02-01 17:24:02.191337: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:02.197027: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:02.210458: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 17:24:02.24937: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-01 17:24:02.249963: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:02.273384: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:02.303689: embedding
> test_pipeop_isomap.R: 2026-02-01 17:24:02.305024: DONE
> test_pipeop_isomap.R: 2026-02-01 17:24:02.373424: Isomap START
> test_pipeop_isomap.R: 2026-02-01 17:24:02.373821: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:02.380907: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:02.395035: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 17:24:02.430729: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-01 17:24:02.431275: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:02.442354: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:02.471077: embedding
> test_pipeop_isomap.R: 2026-02-01 17:24:02.472008: DONE
> test_pipeop_isomap.R: 2026-02-01 17:24:02.534768: Isomap START
> test_pipeop_isomap.R: 2026-02-01 17:24:02.535221: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:02.541269: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:02.555227: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 17:24:02.613055: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-01 17:24:02.613714: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:02.624522: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:02.658555: embedding
> test_pipeop_isomap.R: 2026-02-01 17:24:02.659583: DONE
> test_pipeop_isomap.R: 2026-02-01 17:24:02.724867: Isomap START
> test_pipeop_isomap.R: 2026-02-01 17:24:02.725265: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:02.731129: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:02.746145: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 17:24:02.80511: Isomap START
> test_pipeop_isomap.R: 2026-02-01 17:24:02.805495: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:02.81104: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:02.824737: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 17:24:02.842345: Isomap START
> test_pipeop_isomap.R: 2026-02-01 17:24:02.842716: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 17:24:02.858809: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 17:24:02.87319: Classical Scaling
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_nmf.R: [PipeOpNMFstate]
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_textvectorizer.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_pipeop_textvectorizer.R: Use 'as(., "TsparseMatrix")' instead.
> test_pipeop_textvectorizer.R: See help("Deprecated") and help("Matrix-depr
> test_pipeop_textvectorizer.R: ecated").
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
══ Skipped tests (100) ═════════════════════════════════════════════════════════
• On CRAN (96): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_datefeatures.R:10:3', 'test_pipeop_encodeimpact.R:11:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_encodelmer.R:15:3', 'test_pipeop_encodelmer.R:37:3',
'test_pipeop_encodelmer.R:80:3', 'test_pipeop_featureunion.R:9:3',
'test_pipeop_featureunion.R:134:3', 'test_pipeop_filter.R:7:3',
'test_pipeop_fixfactors.R:9:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_ensemble.R:6:3',
'test_pipeop_impute.R:4:3', 'test_pipeop_imputelearner.R:43:3',
'test_pipeop_isomap.R:10:3', 'test_pipeop_kernelpca.R:9:3',
'test_pipeop_learner.R:17:3', 'test_pipeop_info.R:6:3',
'test_pipeop_learnerpicvplus.R:163:3', 'test_pipeop_missind.R:6:3',
'test_pipeop_modelmatrix.R:7:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_mutate.R:9:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_ovr.R:9:3', 'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_spatialsign.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_subsample.R:6:3',
'test_pipeop_task_preproc.R:4:3', 'test_pipeop_task_preproc.R:14:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.9934503')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
[ FAIL 2 | WARN 0 | SKIP 100 | PASS 13055 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.10.0
Check: examples
Result: ERROR
Running examples in ‘mlr3pipelines-Ex.R’ failed
The error most likely occurred in:
> ### Name: mlr_pipeops_nmf
> ### Title: Non-negative Matrix Factorization
> ### Aliases: mlr_pipeops_nmf PipeOpNMF
>
> ### ** Examples
>
> ## Don't show:
> if (mlr3misc::require_namespaces(c("NMF", "MASS"), quietly = TRUE)) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ ## Don't show:
+ # NMF attaches these packages to search path on load, #929
+ lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"), detach, character.only = TRUE)
+ ## End(Don't show)
+ library("mlr3")
+
+ task = tsk("iris")
+ pop = po("nmf")
+
+ task$data()
+ pop$train(list(task))[[1]]$data()
+
+ pop$state
+ ## Don't show:
+ # BiocGenerics overwrites printer for our tables mlr-org/mlr3#1112
+ # Necessary as detaching packages does not remove registered S3 methods
+ suppressWarnings(try(rm("format.list", envir = .BaseNamespaceEnv$.__S3MethodsTable__.), silent = TRUE))
+ ## End(Don't show)
+ ## Don't show:
+ }) # examplesIf
> lapply(c("package:Biobase", "package:BiocGenerics", "package:generics"),
+ detach, character.only = TRUE)
Error in FUN(X[[i]], ...) : invalid 'name' argument
Calls: withAutoprint ... withVisible -> eval -> eval -> lapply -> lapply -> FUN
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [115s/57s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
Saving _problems/test_filter_ensemble-294.R
Saving _problems/test_filter_ensemble-307.R
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-02 11:27:02.815873: Isomap START
> test_pipeop_isomap.R: 2026-02-02 11:27:02.816147: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:02.81924: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:02.825391: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 11:27:02.837272: Isomap START
> test_pipeop_isomap.R: 2026-02-02 11:27:02.837476: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:02.84002: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:02.846135: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 11:27:02.854917: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 11:27:02.855127: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:02.860235: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:02.875603: embedding
> test_pipeop_isomap.R: 2026-02-02 11:27:02.876146: DONE
> test_pipeop_isomap.R: 2026-02-02 11:27:02.88337: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 11:27:02.883596: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:02.888225: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:02.903366: embedding
> test_pipeop_isomap.R: 2026-02-02 11:27:02.903868: DONE
> test_pipeop_isomap.R: 2026-02-02 11:27:02.925784: Isomap START
> test_pipeop_isomap.R: 2026-02-02 11:27:02.925932: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:02.930501: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:02.964244: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 11:27:02.973709: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 11:27:02.973924: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:02.98988: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:03.064803: embedding
> test_pipeop_isomap.R: 2026-02-02 11:27:03.065929: DONE
> test_pipeop_isomap.R: 2026-02-02 11:27:03.102197: Isomap START
> test_pipeop_isomap.R: 2026-02-02 11:27:03.102371: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:03.105072: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:03.111503: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 11:27:03.12059: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 11:27:03.120836: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:03.12585: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:03.141426: embedding
> test_pipeop_isomap.R: 2026-02-02 11:27:03.142009: DONE
> test_pipeop_isomap.R: 2026-02-02 11:27:03.181059: Isomap START
> test_pipeop_isomap.R: 2026-02-02 11:27:03.181219: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:03.183604: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:03.190358: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 11:27:03.214536: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 11:27:03.214782: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:03.220102: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:03.236249: embedding
> test_pipeop_isomap.R: 2026-02-02 11:27:03.236718: DONE
> test_pipeop_isomap.R: 2026-02-02 11:27:03.258499: Isomap START
> test_pipeop_isomap.R: 2026-02-02 11:27:03.258654: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:03.260922: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:03.269067: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 11:27:03.28278: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 11:27:03.283043: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:03.288452: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:03.303742: embedding
> test_pipeop_isomap.R: 2026-02-02 11:27:03.304404: DONE
> test_pipeop_isomap.R: 2026-02-02 11:27:03.338504: Isomap START
> test_pipeop_isomap.R: 2026-02-02 11:27:03.338718: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:03.341087: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:03.348322: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 11:27:03.362762: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 11:27:03.363429: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:03.368705: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:03.383631: embedding
> test_pipeop_isomap.R: 2026-02-02 11:27:03.384125: DONE
> test_pipeop_isomap.R: 2026-02-02 11:27:03.412164: Isomap START
> test_pipeop_isomap.R: 2026-02-02 11:27:03.412384: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:03.414634: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:03.420743: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 11:27:03.43307: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-02 11:27:03.433294: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:03.437896: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:03.453891: embedding
> test_pipeop_isomap.R: 2026-02-02 11:27:03.454438: DONE
> test_pipeop_isomap.R: 2026-02-02 11:27:03.478633: Isomap START
> test_pipeop_isomap.R: 2026-02-02 11:27:03.47884: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:03.481201: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:03.487537: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 11:27:03.507518: Isomap START
> test_pipeop_isomap.R: 2026-02-02 11:27:03.507659: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:03.509829: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:03.515538: Classical Scaling
> test_pipeop_isomap.R: 2026-02-02 11:27:03.521885: Isomap START
> test_pipeop_isomap.R: 2026-02-02 11:27:03.522021: constructing knn graph
> test_pipeop_isomap.R: 2026-02-02 11:27:03.524458: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-02 11:27:03.53051: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_classweights.R:10:3', 'test_pipeop_boxcox.R:7:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_encodepl.R:5:3', 'test_pipeop_encodepl.R:72:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_histbin.R:7:3',
'test_pipeop_ica.R:7:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_rowapply.R:6:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_filter_ensemble.R:294:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all(is.nan(permutation_filter$scores[task$feature_names]))` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_filter_ensemble.R:307:3'): FilterEnsemble ignores NA scores from wrapped filters ──
Expected `all.equal(object, expected, check.environment = FALSE, ...)` to be TRUE.
Differences:
`actual` is a character vector ('Mean relative difference: 0.4822403')
`expected` is a logical vector (TRUE)
Backtrace:
▆
1. └─global expect_equal(combined_scores, variance_scores * weights[["variance"]]) at test_filter_ensemble.R:307:3
2. └─testthat::expect_true(...)
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 8 | WARN 0 | SKIP 99 | PASS 13004 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.10.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [325s/415s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1]
> test_pipeop_blsmote.R: "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-02-01 15:41:39.348372: Isomap START
> test_pipeop_isomap.R: 2026-02-01 15:41:39.348912: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:39.371138: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:39.412832: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 15:41:39.517808: Isomap START
> test_pipeop_isomap.R: 2026-02-01 15:41:39.518125: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:39.52629: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:39.588489: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 15:41:39.649491: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-01 15:41:39.649932: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:39.707682: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:39.810602: embedding
> test_pipeop_isomap.R: 2026-02-01 15:41:39.811792: DONE
> test_pipeop_isomap.R: 2026-02-01 15:41:39.89065: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-01 15:41:39.890989: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:39.920284: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:40.012893: embedding
> test_pipeop_isomap.R: 2026-02-01 15:41:40.030357: DONE
> test_pipeop_isomap.R: 2026-02-01 15:41:40.204953: Isomap START
> test_pipeop_isomap.R: 2026-02-01 15:41:40.205243: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:40.230409: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:40.508761: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 15:41:40.621627: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-01 15:41:40.62211: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:40.68875: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:41.235134: embedding
> test_pipeop_isomap.R: 2026-02-01 15:41:41.280177: DONE
> test_pipeop_isomap.R: 2026-02-01 15:41:41.586205: Isomap START
> test_pipeop_isomap.R: 2026-02-01 15:41:41.586517: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:41.60407: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:41.644011: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 15:41:41.698323: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-01 15:41:41.698791: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:42.460283: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:42.572968: embedding
> test_pipeop_isomap.R: 2026-02-01 15:41:42.574149: DONE
> test_pipeop_isomap.R: 2026-02-01 15:41:42.841141: Isomap START
> test_pipeop_isomap.R: 2026-02-01 15:41:42.841451: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:42.84867: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:42.889325: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 15:41:42.985527: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-01 15:41:42.985971: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:43.011569: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:43.115318: embedding
> test_pipeop_isomap.R: 2026-02-01 15:41:43.116465: DONE
> test_pipeop_isomap.R: 2026-02-01 15:41:43.282213: Isomap START
> test_pipeop_isomap.R: 2026-02-01 15:41:43.294188: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:43.302119: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:43.354161: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 15:41:43.442749: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-01 15:41:43.454289: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:43.483445: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:43.586796: embedding
> test_pipeop_isomap.R: 2026-02-01 15:41:43.588013: DONE
> test_pipeop_isomap.R: 2026-02-01 15:41:43.757863: Isomap START
> test_pipeop_isomap.R: 2026-02-01 15:41:43.758199: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:43.765208: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:43.81623: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 15:41:43.917094: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-01 15:41:43.917553: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:44.002454: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:44.124889: embedding
> test_pipeop_isomap.R: 2026-02-01 15:41:44.126089: DONE
> test_pipeop_isomap.R: 2026-02-01 15:41:44.268472: Isomap START
> test_pipeop_isomap.R: 2026-02-01 15:41:44.269836: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:44.29199: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:44.336717: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 15:41:44.428926: L-Isomap embed START
> test_pipeop_isomap.R: 2026-02-01 15:41:44.429389: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:44.466623: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:44.56623: embedding
> test_pipeop_isomap.R: 2026-02-01 15:41:44.567397: DONE
> test_pipeop_isomap.R: 2026-02-01 15:41:44.746167: Isomap START
> test_pipeop_isomap.R: 2026-02-01 15:41:44.747805: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:44.754583: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:44.808001: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 15:41:44.975611: Isomap START
> test_pipeop_isomap.R: 2026-02-01 15:41:44.97591: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:44.994857: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:45.042767: Classical Scaling
> test_pipeop_isomap.R: 2026-02-01 15:41:45.072143: Isomap START
> test_pipeop_isomap.R: 2026-02-01 15:41:45.07244: constructing knn graph
> test_pipeop_isomap.R: 2026-02-01 15:41:45.09589: calculating geodesic distances
> test_pipeop_isomap.R: 2026-02-01 15:41:45.140735: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_multiplicityexply.R:9:3', 'test_pipeop_multiplicityimply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_nmf.R:6:3', 'test_pipeop_removeconstants.R:6:3',
'test_pipeop_renamecolumns.R:6:3', 'test_pipeop_replicate.R:9:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_smote.R:10:3',
'test_pipeop_smotenc.R:8:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 0.10.0
Check: tests
Result: ERROR
Running 'testthat.R' [299s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> if (requireNamespace("testthat", quietly = TRUE)) {
+ library("checkmate")
+ library("testthat")
+ library("mlr3")
+ library("paradox")
+ library("mlr3pipelines")
+ test_check("mlr3pipelines")
+ }
Starting 2 test processes.
> test_Graph.R: Training debug.multi with input list(input_1 = 1, input_2 = 1)
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_PipeOp.R: Training test_autotrain
> test_PipeOp.R: Predicting test_autotrain
> test_filter_ensemble.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_mlr_graphs_robustify.R: 'as(<dgCMatrix>, "dgTMatrix")' is deprecated.
> test_mlr_graphs_robustify.R: Use 'as(., "TsparseMatrix")' instead.
> test_mlr_graphs_robustify.R: See help("Deprecated") and help("Matrix-deprecated").
> test_multiplicities.R:
> test_multiplicities.R:
> test_multiplicities.R: [[1]]
> test_multiplicities.R: [1] 0
> test_multiplicities.R:
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
> test_pipeop_blsmote.R: [1] "Borderline-SMOTE done"
Saving _problems/test_pipeop_datefeatures-7.R
Saving _problems/test_pipeop_datefeatures-17.R
> test_pipeop_isomap.R: 2026-01-31 11:05:59.927679: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:05:59.928639: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:05:59.945081: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:05:59.96866: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:00.041448: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:00.042097: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:00.054471: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:00.076267: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:00.114972: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-31 11:06:00.115814: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:00.136665: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:00.175513: embedding
> test_pipeop_isomap.R: 2026-01-31 11:06:00.176903: DONE
> test_pipeop_isomap.R: 2026-01-31 11:06:00.216514: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-31 11:06:00.21718: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:00.23872: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:00.27595: embedding
> test_pipeop_isomap.R: 2026-01-31 11:06:00.277256: DONE
> test_pipeop_isomap.R: 2026-01-31 11:06:00.374994: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:00.375626: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:00.413207: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:00.523538: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:00.578286: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-31 11:06:00.579194: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:00.618239: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:00.859368: embedding
> test_pipeop_isomap.R: 2026-01-31 11:06:00.864566: DONE
> test_pipeop_isomap.R: 2026-01-31 11:06:01.071723: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:01.072379: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:01.084049: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:01.106402: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:01.172316: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-31 11:06:01.173278: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:01.194226: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:01.246443: embedding
> test_pipeop_isomap.R: 2026-01-31 11:06:01.248152: DONE
> test_pipeop_isomap.R: 2026-01-31 11:06:01.448344: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:01.448998: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:01.460259: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:01.483983: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:01.560318: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-31 11:06:01.561025: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:01.57432: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:01.611849: embedding
> test_pipeop_isomap.R: 2026-01-31 11:06:01.612952: DONE
> test_pipeop_isomap.R: 2026-01-31 11:06:01.725915: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:01.72659: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:01.837437: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:01.855074: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:01.916309: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-31 11:06:01.916966: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:01.930296: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:01.977689: embedding
> test_pipeop_isomap.R: 2026-01-31 11:06:01.979267: DONE
> test_pipeop_isomap.R: 2026-01-31 11:06:02.089708: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:02.090159: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:02.098939: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:02.115924: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:02.195116: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-31 11:06:02.19603: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:02.218864: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:02.270282: embedding
> test_pipeop_isomap.R: 2026-01-31 11:06:02.272176: DONE
> test_pipeop_isomap.R: 2026-01-31 11:06:02.392307: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:02.392953: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:02.405096: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:02.427863: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:02.508346: L-Isomap embed START
> test_pipeop_isomap.R: 2026-01-31 11:06:02.509311: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:02.532501: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:02.581692: embedding
> test_pipeop_isomap.R: 2026-01-31 11:06:02.58366: DONE
> test_pipeop_isomap.R: 2026-01-31 11:06:02.747842: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:02.748561: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:02.761433: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:02.784541: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:02.887359: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:02.887854: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:02.897602: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:02.920921: Classical Scaling
> test_pipeop_isomap.R: 2026-01-31 11:06:02.960313: Isomap START
> test_pipeop_isomap.R: 2026-01-31 11:06:02.960974: constructing knn graph
> test_pipeop_isomap.R: 2026-01-31 11:06:02.973297: calculating geodesic distances
> test_pipeop_isomap.R: 2026-01-31 11:06:02.996631: Classical Scaling
Saving _problems/test_pipeop_nmf-45.R
Saving _problems/test_pipeop_nmf-73.R
Saving _problems/test_pipeop_nmf-93.R
Saving _problems/test_pipeop_nmf-98.R
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_task_preproc.R: Training debug_affectcols
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
> test_pipeop_tunethreshold.R: OptimInstanceSingleCrit is deprecated. Use OptimInstanceBatchSingleCrit instead.
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
══ Skipped tests (99) ══════════════════════════════════════════════════════════
• On CRAN (95): 'test_CnfFormula_simplify.R:6:3', 'test_CnfFormula.R:591:3',
'test_Graph.R:283:3', 'test_PipeOp.R:32:1', 'test_GraphLearner.R:5:3',
'test_GraphLearner.R:221:3', 'test_GraphLearner.R:343:3',
'test_GraphLearner.R:408:3', 'test_GraphLearner.R:571:3',
'test_dictionary.R:7:3', 'test_learner_weightedaverage.R:5:3',
'test_learner_weightedaverage.R:57:3',
'test_learner_weightedaverage.R:105:3',
'test_learner_weightedaverage.R:152:3', 'test_meta.R:39:3',
'test_mlr_graphs_branching.R:26:3', 'test_mlr_graphs_bagging.R:6:3',
'test_mlr_graphs_robustify.R:5:3', 'test_pipeop_adas.R:8:3',
'test_pipeop_blsmote.R:8:3', 'test_pipeop_branch.R:4:3',
'test_pipeop_chunk.R:4:3', 'test_pipeop_classbalancing.R:7:3',
'test_pipeop_boxcox.R:7:3', 'test_pipeop_classweights.R:10:3',
'test_pipeop_collapsefactors.R:6:3', 'test_pipeop_colapply.R:9:3',
'test_pipeop_copy.R:5:3', 'test_pipeop_colroles.R:6:3',
'test_pipeop_decode.R:14:3', 'test_pipeop_encode.R:21:3',
'test_pipeop_encodeimpact.R:11:3', 'test_pipeop_encodepl.R:5:3',
'test_pipeop_encodepl.R:72:3', 'test_pipeop_encodelmer.R:15:3',
'test_pipeop_encodelmer.R:37:3', 'test_pipeop_encodelmer.R:80:3',
'test_pipeop_featureunion.R:9:3', 'test_pipeop_featureunion.R:134:3',
'test_pipeop_filter.R:7:3', 'test_pipeop_fixfactors.R:9:3',
'test_pipeop_histbin.R:7:3', 'test_pipeop_ica.R:7:3',
'test_pipeop_ensemble.R:6:3', 'test_pipeop_impute.R:4:3',
'test_pipeop_imputelearner.R:43:3', 'test_pipeop_isomap.R:10:3',
'test_pipeop_kernelpca.R:9:3', 'test_pipeop_learner.R:17:3',
'test_pipeop_info.R:6:3', 'test_pipeop_learnerpicvplus.R:163:3',
'test_pipeop_missind.R:6:3', 'test_pipeop_modelmatrix.R:7:3',
'test_pipeop_learnercv.R:31:3', 'test_pipeop_multiplicityexply.R:9:3',
'test_pipeop_mutate.R:9:3', 'test_pipeop_nearmiss.R:7:3',
'test_pipeop_multiplicityimply.R:9:3', 'test_pipeop_ovr.R:9:3',
'test_pipeop_ovr.R:48:3', 'test_pipeop_pca.R:8:3',
'test_pipeop_proxy.R:14:3', 'test_pipeop_quantilebin.R:5:3',
'test_pipeop_randomprojection.R:6:3', 'test_pipeop_randomresponse.R:5:3',
'test_pipeop_removeconstants.R:6:3', 'test_pipeop_renamecolumns.R:6:3',
'test_pipeop_replicate.R:9:3', 'test_pipeop_nmf.R:6:3',
'test_pipeop_scale.R:6:3', 'test_pipeop_scale.R:10:3',
'test_pipeop_scalemaxabs.R:6:3', 'test_pipeop_scalerange.R:7:3',
'test_pipeop_select.R:9:3', 'test_pipeop_rowapply.R:6:3',
'test_pipeop_smote.R:10:3', 'test_pipeop_smotenc.R:8:3',
'test_pipeop_subsample.R:6:3', 'test_pipeop_targetinvert.R:4:3',
'test_pipeop_targetmutate.R:5:3', 'test_pipeop_targettrafo.R:4:3',
'test_pipeop_targettrafoscalerange.R:5:3', 'test_pipeop_task_preproc.R:4:3',
'test_pipeop_task_preproc.R:14:3', 'test_pipeop_spatialsign.R:6:3',
'test_pipeop_tomek.R:7:3', 'test_pipeop_textvectorizer.R:37:3',
'test_pipeop_textvectorizer.R:186:3', 'test_pipeop_unbranch.R:10:3',
'test_pipeop_updatetarget.R:89:3', 'test_pipeop_vtreat.R:9:3',
'test_pipeop_yeojohnson.R:7:3', 'test_pipeop_tunethreshold.R:111:3',
'test_pipeop_tunethreshold.R:191:3', 'test_typecheck.R:188:3'
• Skipping (1): 'test_GraphLearner.R:1278:3'
• empty test (3): 'test_pipeop_isomap.R:111:1', 'test_pipeop_missind.R:101:1',
'test_ppl.R:61:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pipeop_datefeatures.R:7:3'): PipeOpDateFeatures - basic properties ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:7:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_datefeatures.R:17:3'): PipeOpDateFeatures - finds POSIXct column ──
Error in `seq.Date(as.Date("2020-01-31"), length.out = 150L)`: exactly two of 'to', 'by' and 'length.out' / 'along.with' must be specified
Backtrace:
▆
1. ├─base::seq(as.Date("2020-01-31"), length.out = 150L) at test_pipeop_datefeatures.R:17:3
2. └─base::seq.Date(as.Date("2020-01-31"), length.out = 150L)
── Error ('test_pipeop_nmf.R:45:3'): PipeOpNMF - does not modify search path when NMF is not loaded, fix for #929 ──
Error in `detach(package:generics)`: invalid 'name' argument
Backtrace:
▆
1. └─base::detach(package:generics) at test_pipeop_nmf.R:45:3
── Failure ('test_pipeop_nmf.R:73:3'): PipeOpNMF - does not modify search path when NMF is loaded, fix for #929 ──
Expected `all(...)` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Failure ('test_pipeop_nmf.R:93:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Expected `all(paste0("package:", c("BiocGenerics", "generics")) %in% search())` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
── Error ('test_pipeop_nmf.R:98:3'): PipeOpNMF - does not modify search path when some of NMF's dependencies are loaded, fix for #929 ──
Error in `FUN(X[[i]], ...)`: invalid 'name' argument
This happened in PipeOp nmf's $train()
Backtrace:
▆
1. ├─op$train(list(tsk("iris"))) at test_pipeop_nmf.R:98:3
2. │ └─mlr3pipelines:::.__PipeOp__train(...)
3. │ ├─base::withCallingHandlers(...)
4. │ └─private$.train(input)
5. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train(...)
6. │ └─private$.train_task(intask)
7. │ └─mlr3pipelines:::.__PipeOpTaskPreproc__.train_task(...)
8. │ ├─data.table::as.data.table(...)
9. │ └─private$.train_dt(dt, task$levels(cols), task$truth())
10. │ └─mlr3pipelines:::.__PipeOpNMF__.train_dt(...)
11. │ └─mlr3misc::map(to_be_detached, detach, character.only = TRUE)
12. │ └─base::lapply(.x, .f, ...)
13. │ └─base (local) FUN(X[[i]], ...)
14. │ └─base::stop("invalid 'name' argument")
15. └─base::.handleSimpleError(...)
16. └─mlr3pipelines (local) h(simpleError(msg, call))
[ FAIL 6 | WARN 0 | SKIP 99 | PASS 13006 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64