Last updated on 2025-12-21 03:49:42 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.3 | 14.16 | 138.74 | 152.90 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.3.3 | 10.19 | 96.51 | 106.70 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.3 | 25.00 | 220.37 | 245.37 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.3 | 23.00 | 223.61 | 246.61 | ERROR | |
| r-devel-windows-x86_64 | 0.3.3 | 18.00 | 178.00 | 196.00 | OK | |
| r-patched-linux-x86_64 | 0.3.3 | 15.91 | 154.10 | 170.01 | OK | |
| r-release-linux-x86_64 | 0.3.3 | 12.68 | 152.62 | 165.30 | OK | |
| r-release-macos-arm64 | 0.3.3 | OK | ||||
| r-release-macos-x86_64 | 0.3.3 | 11.00 | 162.00 | 173.00 | OK | |
| r-release-windows-x86_64 | 0.3.3 | 18.00 | 175.00 | 193.00 | OK | |
| r-oldrel-macos-arm64 | 0.3.3 | OK | ||||
| r-oldrel-macos-x86_64 | 0.3.3 | 11.00 | 196.00 | 207.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.3 | 23.00 | 214.00 | 237.00 | OK |
Version: 0.3.3
Check: examples
Result: ERROR
Running examples in ‘mstate-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: plot.Cuminc
> ### Title: Plot method for Cuminc objects
> ### Aliases: plot.Cuminc
>
> ### ** Examples
>
> library(ggplot2)
>
> data("aidssi")
> head(aidssi)
patnr time status cause ccr5
1 1 9.106 1 AIDS WW
2 2 11.039 0 event-free WM
3 3 2.234 1 AIDS WW
4 4 9.878 2 SI WM
5 5 3.819 1 AIDS WW
6 6 6.801 1 AIDS WW
> si <- aidssi
>
> # No grouping
> cum_incid <- Cuminc(
+ time = "time",
+ status = "status",
+ data = si
+ )
>
> plot(
+ x = cum_incid,
+ use.ggplot = TRUE,
+ conf.type = "none",
+ lty = 1:2,
+ conf.int = 0.95
+ )
Error in `[.data.table`(df_long, , `:=`(CI_low = make_prob_confint(prob, :
attempt access index 6/6 in VECTOR_ELT
Calls: plot ... ggplot.Cuminc -> prep_Cuminc_df -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.3.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘visuals_demo.Rmd’ using rmarkdown
Quitting from visuals_demo.Rmd:202-205 [plot_pt_filled2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
---
Backtrace:
▆
1. ├─base::plot(pt.WW, use.ggplot = TRUE)
2. └─mstate:::plot.probtrans(pt.WW, use.ggplot = TRUE)
3. └─mstate:::ggplot.probtrans(...)
4. └─mstate:::prep_probtrans_df(...)
5. ├─df_long[, `:=`(cum_probs, cumsum(prob)), by = time]
6. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'visuals_demo.Rmd' failed with diagnostics:
attempt access index 8/8 in VECTOR_ELT
--- failed re-building ‘visuals_demo.Rmd’
--- re-building ‘Tutorial.Rnw’ using Sweave
Loading required package: survival
--- finished re-building ‘Tutorial.Rnw’
SUMMARY: processing the following file failed:
‘visuals_demo.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 0.3.3
Check: examples
Result: ERROR
Running examples in ‘mstate-Ex.R’ failed
The error most likely occurred in:
> ### Name: plot.Cuminc
> ### Title: Plot method for Cuminc objects
> ### Aliases: plot.Cuminc
>
> ### ** Examples
>
> library(ggplot2)
>
> data("aidssi")
> head(aidssi)
patnr time status cause ccr5
1 1 9.106 1 AIDS WW
2 2 11.039 0 event-free WM
3 3 2.234 1 AIDS WW
4 4 9.878 2 SI WM
5 5 3.819 1 AIDS WW
6 6 6.801 1 AIDS WW
> si <- aidssi
>
> # No grouping
> cum_incid <- Cuminc(
+ time = "time",
+ status = "status",
+ data = si
+ )
>
> plot(
+ x = cum_incid,
+ use.ggplot = TRUE,
+ conf.type = "none",
+ lty = 1:2,
+ conf.int = 0.95
+ )
Error in `[.data.table`(df_long, , `:=`(CI_low = make_prob_confint(prob, :
attempt access index 6/6 in VECTOR_ELT
Calls: plot ... ggplot.Cuminc -> prep_Cuminc_df -> [ -> [.data.table
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 0.3.3
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘visuals_demo.Rmd’ using rmarkdown
Quitting from visuals_demo.Rmd:202-205 [plot_pt_filled2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.table`:
! attempt access index 8/8 in VECTOR_ELT
---
Backtrace:
▆
1. ├─base::plot(pt.WW, use.ggplot = TRUE)
2. └─mstate:::plot.probtrans(pt.WW, use.ggplot = TRUE)
3. └─mstate:::ggplot.probtrans(...)
4. └─mstate:::prep_probtrans_df(...)
5. ├─df_long[, `:=`(cum_probs, cumsum(prob)), by = time]
6. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'visuals_demo.Rmd' failed with diagnostics:
attempt access index 8/8 in VECTOR_ELT
--- failed re-building ‘visuals_demo.Rmd’
--- re-building ‘Tutorial.Rnw’ using Sweave
Loading required package: survival
--- finished re-building ‘Tutorial.Rnw’
SUMMARY: processing the following file failed:
‘visuals_demo.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc