Last updated on 2025-07-12 22:49:18 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-gcc | 0.1.1 | 21.77 | 57.28 | 79.05 | OK | |
| r-devel-linux-x86_64-fedora-clang | 0.1.1 | 190.87 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 0.1.1 | 185.62 | OK | |||
| r-release-linux-x86_64 | 0.1.1 | 25.80 | 73.80 | 99.60 | ERROR | |
| r-release-macos-x86_64 | 0.1.1 | 113.00 | OK | |||
| r-release-windows-x86_64 | 0.1.1 | 34.00 | 129.00 | 163.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.1 | 109.00 | NOTE |
Version: 0.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [17s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(pvEBayes)
>
> test_check("pvEBayes")
The alpha value selected under AIC is 0,
The alpha value selected under BIC is 0.
alpha AIC BIC num_mixture
1 0.0 1226.166 1273.831 200
2 0.1 1226.166 1273.831 200
3 0.3 1226.166 1273.831 200
4 0.5 1226.166 1273.831 200
5 0.7 1226.166 1273.831 200
6 0.9 1226.166 1273.831 200
The hyperparameters selected under AIC is (p = 120, c0 = 0.01),
The hyperparameters selected under BIC is (p = 120, c0 = 0.01).,
p c0 AIC BIC
1 40 1e-05 34.10699 34.42255
2 60 1e-05 34.90759 35.25496
3 80 1e-05 35.72419 36.10400
4 100 1e-05 37.80020 38.26246
5 120 1e-05 38.73868 39.23823
6 40 1e-04 29.66394 29.80296
7 60 1e-04 32.01391 32.24629
8 80 1e-04 33.63691 33.93376
9 100 1e-04 34.71119 35.05072
10 120 1e-04 35.61688 35.99239
11 40 1e-03 22.79611 22.66169
12 60 1e-03 26.97632 27.00808
13 80 1e-03 29.51066 29.64316
14 100 1e-03 30.55376 30.72775
15 120 1e-03 31.16307 31.36130
16 40 1e-02 24.28846 24.19956
17 60 1e-02 23.20719 23.07582
18 80 1e-02 21.68559 21.49393
19 100 1e-02 20.64329 20.41039
20 120 1e-02 19.15179 18.85971
21 40 1e-01 Inf Inf
22 60 1e-01 27.01397 27.01590
23 80 1e-01 Inf Inf
24 100 1e-01 32.28480 32.49610
25 120 1e-01 Inf Inf
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 13 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-pvEBayes_object_S3_methods.R:11:3'): pvEBayes object associated functions ──
Error in `apply(., 1, max)`: dim(X) must have a positive length
Backtrace:
▆
1. ├─pvEBayes::heatmap_pvEBayes(obj) at test-pvEBayes_object_S3_methods.R:11:3
2. │ └─... %>% order()
3. ├─base::order(.)
4. └─base::apply(., 1, max)
[ FAIL 1 | WARN 2 | SKIP 0 | PASS 13 ]
Error: Test failures
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.1.1
Check: installed package size
Result: NOTE
installed size is 10.2Mb
sub-directories of 1Mb or more:
libs 9.9Mb
Flavor: r-oldrel-macos-x86_64