Last updated on 2026-07-01 13:52:48 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 4.1.0 | 9.98 | 178.26 | 188.24 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 4.1.0 | 7.03 | 148.37 | 155.40 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 4.1.0 | 17.00 | 387.47 | 404.47 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 4.1.0 | 18.00 | 520.40 | 538.40 | ERROR | |
| r-devel-windows-x86_64 | 4.1.0 | 16.00 | 345.00 | 361.00 | ERROR | |
| r-patched-linux-x86_64 | 4.1.0 | 11.94 | 193.91 | 205.85 | ERROR | |
| r-release-linux-x86_64 | 4.1.0 | ERROR | ||||
| r-release-macos-arm64 | 4.1.0 | 2.00 | 276.00 | 278.00 | OK | |
| r-release-macos-x86_64 | 4.1.0 | 7.00 | 470.00 | 477.00 | OK | |
| r-release-windows-x86_64 | 4.1.0 | 35.00 | 344.00 | 379.00 | ERROR | |
| r-oldrel-macos-arm64 | 4.1.0 | 2.00 | 281.00 | 283.00 | OK | |
| r-oldrel-macos-x86_64 | 4.1.0 | 7.00 | 460.00 | 467.00 | OK | |
| r-oldrel-windows-x86_64 | 4.1.0 | 18.00 | 410.00 | 428.00 | ERROR |
Version: 4.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [46s/433s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.20.0 with GnuTLS/3.8.13
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking file3464d62f57c60c.tar.gz locally
unpacked file3464d62f57c60c.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file3464d65bc54f88.tar.gz locally
unpacked file3464d65bc54f88.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file3464d611e0e6b9.tar.gz locally
unpacked file3464d611e0e6b9.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking file3464d650036bcf.tar.gz locally
unpacked file3464d650036bcf.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking file3464d6431a681b.tar.gz locally
unpacked file3464d6431a681b.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
gzip: stdin: not in gzip format
/usr/bin/tar: Child returned status 1
/usr/bin/tar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpVv9Lwz/file3464d662f4c415.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmpVv9Lwz/file3464d6600a0ddb.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpVv9Lwz/file3464d61183c1b7.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmpVv9Lwz/file3464d65b5cd207.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpVv9Lwz/file3464d6268108a4.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpVv9Lwz/file3464d64362f3df.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmpVv9Lwz/file3464d644d61cf0.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: /home/hornik/tmp/scratch/RtmpVv9Lwz/file3464d63a37a346.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
CRAN not available, skipping base/recommended package filtering: URL 'https://lib.stat.cmu.edu/R/CRAN/src/contrib/Meta/archive.rds': Timeout of 60 seconds was reached
CRAN not available, skipping base/recommended package filtering: URL 'https://lib.stat.cmu.edu/R/CRAN/src/contrib/Meta/archive.rds': Timeout of 60 seconds was reached
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking file3464d616606189.tar.gz locally
unpacked file3464d616606189.tar.gz locally
unpacking file3464d6219314d6.tar.gz locally
unpacked file3464d6219314d6.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking file3464d67d0a24c7.tar.gz locally
unpacked file3464d67d0a24c7.tar.gz locally
unpacking file3464d62cb3d3c4.tar.gz locally
unpacking file3464d6110393c9.tar.gz locally
unpacking file3464d6748b89c6.tar.gz locally
unpacking file3464d629d89063.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: /home/hornik/tmp/scratch/RtmpVv9Lwz/summary_report_mockpkg_0.1.0.html
Report will be written to: /home/hornik/tmp/scratch/RtmpVv9Lwz/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: /home/hornik/tmp/scratch/RtmpVv9Lwz/file3464d637accae2/summary_report_pkgA_0.1.0.html
Output created: /home/hornik/tmp/scratch/RtmpVv9Lwz/file3464d637accae2/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to /home/hornik/tmp/R.check/r-devel-clang/Work/PKGS/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 76 | PASS 1888 ]
══ Skipped tests (76) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 844.4 < 846.0
Difference: -1.6 < 0
[ FAIL 1 | WARN 0 | SKIP 76 | PASS 1888 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 4.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [42s/75s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.20.0 with OpenSSL/3.6.3
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking file1e759b6944fda8.tar.gz locally
unpacked file1e759b6944fda8.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file1e759b1b126327.tar.gz locally
unpacked file1e759b1b126327.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file1e759b2c1c49b2.tar.gz locally
unpacked file1e759b2c1c49b2.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking file1e759bd148e75.tar.gz locally
unpacked file1e759bd148e75.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking file1e759bf09d8af.tar.gz locally
unpacked file1e759bf09d8af.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
gzip: stdin: not in gzip format
/usr/bin/tar: Child returned status 1
/usr/bin/tar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: /tmp/RtmpTGSL5e/file1e759b247957c6.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: /tmp/RtmpTGSL5e/file1e759b666e76e4.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: /tmp/RtmpTGSL5e/file1e759bd719ba4.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: /tmp/RtmpTGSL5e/file1e759b767d785b.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: /tmp/RtmpTGSL5e/file1e759b6799ec23.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: /tmp/RtmpTGSL5e/file1e759b1fc7385f.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: /tmp/RtmpTGSL5e/file1e759b44410885.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: /tmp/RtmpTGSL5e/file1e759b221911de.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking file1e759b2579d274.tar.gz locally
unpacked file1e759b2579d274.tar.gz locally
unpacking file1e759b343a5d0d.tar.gz locally
unpacked file1e759b343a5d0d.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking file1e759b9675da8.tar.gz locally
unpacked file1e759b9675da8.tar.gz locally
unpacking file1e759b429da1e6.tar.gz locally
unpacking file1e759b42e80572.tar.gz locally
unpacking file1e759b5cf1ef48.tar.gz locally
unpacking file1e759b6e535822.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: /tmp/RtmpTGSL5e/summary_report_mockpkg_0.1.0.html
Report will be written to: /tmp/RtmpTGSL5e/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: /tmp/RtmpTGSL5e/file1e759b4dc87d25/summary_report_pkgA_0.1.0.html
Output created: /tmp/RtmpTGSL5e/file1e759b4dc87d25/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
• Skipping test because CRAN is available (1):
'test-parse_dcf_dependencies.R:136:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 844.4 < 846.0
Difference: -1.6 < 0
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 4.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [73s/214s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.11.1 with OpenSSL/3.2.6
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking filee64ac2caa5e2a.tar.gz locally
unpacked filee64ac2caa5e2a.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking filee64ac66028c17.tar.gz locally
unpacked filee64ac66028c17.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking filee64ac11cc71e9.tar.gz locally
unpacked filee64ac11cc71e9.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking filee64ac1f83f561.tar.gz locally
unpacked filee64ac1f83f561.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking filee64ac142d21f0.tar.gz locally
unpacked filee64ac142d21f0.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
gzip: stdin: not in gzip format
/usr/bin/gtar: Child returned status 1
/usr/bin/gtar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac24a89ba2.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac47b44d61.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac46bf05c4.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac77a74ee2.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64acde08fa2.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac7dbec5e7.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac23829d04.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac25527fce.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking filee64ac20791032.tar.gz locally
unpacked filee64ac20791032.tar.gz locally
unpacking filee64ac781c46ef.tar.gz locally
unpacked filee64ac781c46ef.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking filee64ac4ccb2dfa.tar.gz locally
unpacked filee64ac4ccb2dfa.tar.gz locally
unpacking filee64acc316f02.tar.gz locally
unpacking filee64ac2428cb49.tar.gz locally
unpacking filee64ac427efd12.tar.gz locally
unpacking filee64ac466a3d0a.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/summary_report_mockpkg_0.1.0.html
Report will be written to: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac5b696fbf/summary_report_pkgA_0.1.0.html
Output created: /tmp/RtmpQxFbeC/working_dir/RtmpRwWyhZ/filee64ac5b696fbf/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to /data/gannet/ripley/R/packages/tests-clang/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
• Skipping test because CRAN is available (1):
'test-parse_dcf_dependencies.R:136:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 844.4 < 846.0
Difference: -1.6 < 0
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 4.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [89s/115s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.11.1 with OpenSSL/3.2.6
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking file1a84125c42ba58.tar.gz locally
unpacked file1a84125c42ba58.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file1a84124c38d32f.tar.gz locally
unpacked file1a84124c38d32f.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file1a84121e051d1.tar.gz locally
unpacked file1a84121e051d1.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking file1a84124ec44a6b.tar.gz locally
unpacked file1a84124ec44a6b.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking file1a841220923aad.tar.gz locally
unpacked file1a841220923aad.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
gzip: stdin: not in gzip format
/usr/bin/gtar: Child returned status 1
/usr/bin/gtar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a8412183ede2d.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a841253fbe23.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a84124ba16c5c.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a8412516297bc.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a84122e2ce732.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a84121f1f93c.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a841259effbf9.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a8412435faf57.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking file1a84121a17b3d.tar.gz locally
unpacked file1a84121a17b3d.tar.gz locally
unpacking file1a841250a729d6.tar.gz locally
unpacked file1a841250a729d6.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking file1a84122088cb61.tar.gz locally
unpacked file1a84122088cb61.tar.gz locally
unpacking file1a841239e55a3c.tar.gz locally
unpacking file1a84121dd653a.tar.gz locally
unpacking file1a84123932133f.tar.gz locally
unpacking file1a84122018735d.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/summary_report_mockpkg_0.1.0.html
Report will be written to: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a84122a3f03f/summary_report_pkgA_0.1.0.html
Output created: /tmp/RtmpQ6vnz8/working_dir/Rtmp4Ne2BS/file1a84122a3f03f/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to /data/gannet/ripley/R/packages/tests-devel/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
• Skipping test because CRAN is available (1):
'test-parse_dcf_dependencies.R:136:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 844.4 < 846.0
Difference: -1.6 < 0
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 4.1.0
Check: for non-standard things in the check directory
Result: NOTE
Found the following files/directories:
‘test.package.0005’ ‘test.package.0006’ ‘test.package.0009’
‘test.package.0010’
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 4.1.0
Check: tests
Result: ERROR
Running 'testthat.R' [79s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.14.1 with Schannel
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking filece5c21981501.tar.gz locally
unpacked filece5c21981501.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking filece5c181b283.tar.gz locally
unpacked filece5c181b283.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking filece5c15663198.tar.gz locally
unpacked filece5c15663198.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking filece5c668a7827.tar.gz locally
unpacked filece5c668a7827.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking filece5c720953d6.tar.gz locally
unpacked filece5c720953d6.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
/usr/bin/tar: Removing leading `D:' from member names
/usr/bin/tar: D\:\temp\2026_06_29_01_50_00_20080\\RtmpakGyP7/old_structure: Cannot stat: No such file or directory
/usr/bin/tar: Exiting with failure status due to previous errors
gzip: stdin: not in gzip format
/usr/bin/tar: Child returned status 1
/usr/bin/tar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: D:\temp\2026_06_29_01_50_00_20080\RtmpakGyP7\filece5c617989d.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: D:\temp\2026_06_29_01_50_00_20080\RtmpakGyP7\filece5cb913d8.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: D:\temp\2026_06_29_01_50_00_20080\RtmpakGyP7\filece5c4437d23.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: D:\temp\2026_06_29_01_50_00_20080\RtmpakGyP7\filece5c5e7236d.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: D:\temp\2026_06_29_01_50_00_20080\RtmpakGyP7\filece5c310866a9.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: D:\temp\2026_06_29_01_50_00_20080\RtmpakGyP7\filece5c16a763ae.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: D:\temp\2026_06_29_01_50_00_20080\RtmpakGyP7\filece5c5df97f8b.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: D:\temp\2026_06_29_01_50_00_20080\RtmpakGyP7\filece5c4bf15206.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking filece5cbef3a4.tar.gz locally
unpacked filece5cbef3a4.tar.gz locally
unpacking filece5c1078586a.tar.gz locally
unpacked filece5c1078586a.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking filece5c1eed6795.tar.gz locally
unpacked filece5c1eed6795.tar.gz locally
unpacking filece5c6a02a40.tar.gz locally
unpacking filece5c59751398.tar.gz locally
unpacking filece5c7d7e780d.tar.gz locally
unpacking filece5c46ff473c.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: D:/temp/2026_06_29_01_50_00_20080/RtmpakGyP7/summary_report_mockpkg_0.1.0.html
Report will be written to: D:/temp/2026_06_29_01_50_00_20080/RtmpakGyP7/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: D:/temp/2026_06_29_01_50_00_20080/RtmpakGyP7/filece5c59646708/summary_report_pkgA_0.1.0.html
Output created: D:/temp/2026_06_29_01_50_00_20080/RtmpakGyP7/filece5c59646708/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to d:/Rcompile/CRANpkg/local/4.7/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
• Skipping test because CRAN is available (1):
'test-parse_dcf_dependencies.R:136:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 844.4 < 846.0
Difference: -1.6 < 0
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 4.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [51s/78s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.20.0 with GnuTLS/3.8.13
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking file3c78982e07b6d6.tar.gz locally
unpacked file3c78982e07b6d6.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file3c789848e7347e.tar.gz locally
unpacked file3c789848e7347e.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file3c78985832bc14.tar.gz locally
unpacked file3c78985832bc14.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking file3c789823300117.tar.gz locally
unpacked file3c789823300117.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking file3c78984bf28fc1.tar.gz locally
unpacked file3c78984bf28fc1.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
gzip: stdin: not in gzip format
/usr/bin/tar: Child returned status 1
/usr/bin/tar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: /home/hornik/tmp/scratch/RtmphKeZnV/file3c789844549bfe.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmphKeZnV/file3c78984a1c61fd.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmphKeZnV/file3c789859d41ff4.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmphKeZnV/file3c78986d44476e.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmphKeZnV/file3c789878148d2b.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmphKeZnV/file3c78982ce541b9.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmphKeZnV/file3c78982ef5bdbe.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: /home/hornik/tmp/scratch/RtmphKeZnV/file3c789820739bc2.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking file3c78987bcd62eb.tar.gz locally
unpacked file3c78987bcd62eb.tar.gz locally
unpacking file3c78987c49606f.tar.gz locally
unpacked file3c78987c49606f.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking file3c789811ada742.tar.gz locally
unpacked file3c789811ada742.tar.gz locally
unpacking file3c7898679457ee.tar.gz locally
unpacking file3c78982cc3c86f.tar.gz locally
unpacking file3c7898fe4f8a3.tar.gz locally
unpacking file3c7898375675c8.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: /home/hornik/tmp/scratch/RtmphKeZnV/summary_report_mockpkg_0.1.0.html
Report will be written to: /home/hornik/tmp/scratch/RtmphKeZnV/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: /home/hornik/tmp/scratch/RtmphKeZnV/file3c78983c31c5ee/summary_report_pkgA_0.1.0.html
Output created: /home/hornik/tmp/scratch/RtmphKeZnV/file3c78983c31c5ee/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to /home/hornik/tmp/R.check/r-patched-gcc/Work/PKGS/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
• Skipping test because CRAN is available (1):
'test-parse_dcf_dependencies.R:136:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 844.4 < 846.0
Difference: -1.6 < 0
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 4.1.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [52s/94s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.20.0 with GnuTLS/3.8.13
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking filee8066e1e62d3.tar.gz locally
unpacked filee8066e1e62d3.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking filee8066e2cf1e0.tar.gz locally
unpacked filee8066e2cf1e0.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking filee80662762f14d.tar.gz locally
unpacked filee80662762f14d.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking filee80667d57de82.tar.gz locally
unpacked filee80667d57de82.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking filee806636eb757f.tar.gz locally
unpacked filee806636eb757f.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
gzip: stdin: not in gzip format
/usr/bin/tar: Child returned status 1
/usr/bin/tar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: /home/hornik/tmp/scratch/RtmptSEVxt/filee8066350d96da.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmptSEVxt/filee806630a884f8.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmptSEVxt/filee806672ddb098.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmptSEVxt/filee806658c067d4.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmptSEVxt/filee806677d6400c.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: /home/hornik/tmp/scratch/RtmptSEVxt/filee806648f129b6.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: /home/hornik/tmp/scratch/RtmptSEVxt/filee806641b27469.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: /home/hornik/tmp/scratch/RtmptSEVxt/filee806621616cb0.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking filee80664643411e.tar.gz locally
unpacked filee80664643411e.tar.gz locally
unpacking filee806626cb4e7f.tar.gz locally
unpacked filee806626cb4e7f.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking filee80665e604d2e.tar.gz locally
unpacked filee80665e604d2e.tar.gz locally
unpacking filee80661feb66e7.tar.gz locally
unpacking filee806647c59d54.tar.gz locally
unpacking filee806658e9dea4.tar.gz locally
unpacking filee806639e2b59d.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: /home/hornik/tmp/scratch/RtmptSEVxt/summary_report_mockpkg_0.1.0.html
Report will be written to: /home/hornik/tmp/scratch/RtmptSEVxt/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: /home/hornik/tmp/scratch/RtmptSEVxt/filee80662282a242/summary_report_pkgA_0.1.0.html
Output created: /home/hornik/tmp/scratch/RtmptSEVxt/filee80662282a242/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to /home/hornik/tmp/R.check/r-release-gcc/Work/PKGS/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
• Skipping test because CRAN is available (1):
'test-parse_dcf_dependencies.R:136:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 844.4 < 846.0
Difference: -1.6 < 0
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 4.1.0
Check: tests
Result: ERROR
Running 'testthat.R' [79s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.14.1 with Schannel
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking file5e7c30fc72e3.tar.gz locally
unpacked file5e7c30fc72e3.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file5e7c62e15ac0.tar.gz locally
unpacked file5e7c62e15ac0.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file5e7c47ae6ff4.tar.gz locally
unpacked file5e7c47ae6ff4.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking file5e7c723a2cfe.tar.gz locally
unpacked file5e7c723a2cfe.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking file5e7c42a529f6.tar.gz locally
unpacked file5e7c42a529f6.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
/usr/bin/tar: Removing leading `D:' from member names
/usr/bin/tar: D\:\temp\2026_06_25_01_50_00_5607\\RtmpAlaTYm/old_structure: Cannot stat: No such file or directory
/usr/bin/tar: Exiting with failure status due to previous errors
gzip: stdin: not in gzip format
/usr/bin/tar: Child returned status 1
/usr/bin/tar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: D:\temp\2026_06_25_01_50_00_5607\RtmpAlaTYm\file5e7c679459e3.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: D:\temp\2026_06_25_01_50_00_5607\RtmpAlaTYm\file5e7c7e111ae1.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: D:\temp\2026_06_25_01_50_00_5607\RtmpAlaTYm\file5e7c3fcc3490.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: D:\temp\2026_06_25_01_50_00_5607\RtmpAlaTYm\file5e7c69f85cf9.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: D:\temp\2026_06_25_01_50_00_5607\RtmpAlaTYm\file5e7cb4d1e41.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: D:\temp\2026_06_25_01_50_00_5607\RtmpAlaTYm\file5e7c7c54149.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: D:\temp\2026_06_25_01_50_00_5607\RtmpAlaTYm\file5e7c5267319a.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: D:\temp\2026_06_25_01_50_00_5607\RtmpAlaTYm\file5e7c4094bc6.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking file5e7c36c62ae3.tar.gz locally
unpacked file5e7c36c62ae3.tar.gz locally
unpacking file5e7c2e637bcb.tar.gz locally
unpacked file5e7c2e637bcb.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking file5e7c2b0c3694.tar.gz locally
unpacked file5e7c2b0c3694.tar.gz locally
unpacking file5e7cf106f65.tar.gz locally
unpacking file5e7c53d758ee.tar.gz locally
unpacking file5e7c2f8d4b00.tar.gz locally
unpacking file5e7c450b27f1.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: D:/temp/2026_06_25_01_50_00_5607/RtmpAlaTYm/summary_report_mockpkg_0.1.0.html
Report will be written to: D:/temp/2026_06_25_01_50_00_5607/RtmpAlaTYm/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: D:/temp/2026_06_25_01_50_00_5607/RtmpAlaTYm/file5e7ca0d64e5/summary_report_pkgA_0.1.0.html
Output created: D:/temp/2026_06_25_01_50_00_5607/RtmpAlaTYm/file5e7ca0d64e5/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to d:/Rcompile/CRANpkg/local/4.6/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
• Skipping test because CRAN is available (1):
'test-parse_dcf_dependencies.R:136:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 844.4 < 846.0
Difference: -1.6 < 0
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 4.1.0
Check: tests
Result: ERROR
Running 'testthat.R' [95s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # setting R_TESTS to empty string because of
> # https://github.com/hadley/testthat/issues/144
> # and https://github.com/r-lib/testthat/issues/86
> # revert this when that issue in R is fixed.
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(mockery)
> library(risk.assessr)
> library(withr)
> library(dplyr)
Attaching package: 'dplyr'
The following objects are masked from 'package:stats':
filter, lag
The following objects are masked from 'package:base':
intersect, setdiff, setequal, union
> library(jsonlite)
> library(fs)
> library(curl)
Using libcurl 8.14.1 with Schannel
> library(xml2)
>
> test_check("risk.assessr")
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Getting unit test coverage for mockpkg
Unit test coverage for mockpkg finished
Checking for author in mockpkg
Checking host package
NO INTERNAL_RSPM FOUND
Checking GitHub data for NA/mockpkg...
Owner is NA or empty. Returning empty response.
Using package's default risk definition.
Getting unit test coverage for mockpkg
Getting unit test coverage for mockpkg
Invalid 'which' value. Must be one or more of: Depends, Imports, LinkingTo, Suggests, Enhances or 'all'.
No forbidden notes for mockpkg
No forbidden notes for mockpkg
unpacking file11c5471e03bd4.tar.gz locally
unpacked file11c5471e03bd4.tar.gz locally
installing test.package.0009 locally
test.package.0009 installed locally
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file11c545cc021bd.tar.gz locally
unpacked file11c545cc021bd.tar.gz locally
installing test.package.0009 locally
test.package.0009 is already installed
Extracting exported function names for test.package.0009
Extracting exported function bodies for test.package.0009
unpacking file11c5410314f37.tar.gz locally
unpacked file11c5410314f37.tar.gz locally
installing test.package.0010 locally
test.package.0010 installed locally
Extracting exported function names for test.package.0010
Extracting exported function bodies for test.package.0010
unpacking file11c5414b77510.tar.gz locally
unpacked file11c5414b77510.tar.gz locally
installing test.package.0005 locally
test.package.0005 installed locally
Extracting exported function names for test.package.0005
No exported functions from source package test.package.0005
No exported functions from Suggested packages in the DESCRIPTION file
unpacking file11c54647e6f6e.tar.gz locally
unpacked file11c54647e6f6e.tar.gz locally
installing test.package.0006 locally
test.package.0006 installed locally
No R folder found in the package source path
No Suggested packages in the DESCRIPTION file
No Imports or Suggested packages in the DESCRIPTION file
No exported functions from source package mockpkg
/usr/bin/tar: Removing leading `D:' from member names
/usr/bin/tar: D\:\temp\2026_06_29_01_50_00_20080\\Rtmpq4xvwd/old_structure: Cannot stat: No such file or directory
/usr/bin/tar: Exiting with failure status due to previous errors
gzip: stdin: not in gzip format
/usr/bin/tar: Child returned status 1
/usr/bin/tar: Error is not recoverable: exiting now
traceability matrix for unsuccessful
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
high risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
medium risk coverage traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
defunct functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
imported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
rexported functions traceability matrix for testpkg not generated
traceability matrix for testpkg unsuccessful
experimental functions traceability matrix for testpkg not generated
creating traceability matrix for mockpkg
creating traceability matrices for mockpkg without test coverage
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
the execute_coverage parameter = TRUE but the 'function_coverage' object for mockPkg is NULL or non compliant
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for ggalluvial
creating traceability matrices for ggalluvial with test coverage
traceability matrices for ggalluvial successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg without test coverage
creating traceability matrix for mockPkg
creating traceability matrices for mockPkg with test coverage
traceability matrices for mockPkg successful
Failed to download or parse testpkg - DESCRIPTION file not found for testpkg
Failed to download or parse testpkg -
Error:
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgC package
Finished building for pkgA
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Finished building for testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgD package
Finished building for pkgD
Finished building for pkgB
Dependency tree in progress for pkgC package
Finished building for pkgC
Finished building for pkgA
Dependency tree in progress for pkgC package
Finished building for pkgC
Dependency tree in progress for pkgE package
Dependency tree in progress for pkgF package
Dependency tree in progress for pkgG package
Finished building for pkgG
Finished building for pkgF
Finished building for pkgE
Dependency tree in progress for unknownPkg package
Finished building for unknownPkg
Dependency tree in progress for basePkg package
Finished building for basePkg
Building dependency tree for: ggplot2
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Finished building for pkgB
Finished building for pkgA
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
└── pkg (v1.0.0)
└── dep (v2.0.0)
Dependency tree in progress for testpkg package
Finished building for testpkg
└── pkg
├── dep1
└── dep2 (base)
Dependency tree in progress for testpkg package
Finished building for testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for 123 package
Dependency tree in progress for pkg1pkg2 package
Building dependency tree for: testpkg
Building dependency tree for: testpkg
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for testpkg package
Dependency tree in progress for package
Dependency tree in progress for NA package
Dependency tree in progress for package
Dependency tree in progress for testpkg package
Finished building for testpkg
Dependency tree in progress for pkgA package
Dependency tree in progress for pkgB package
Dependency tree in progress for pkgA package
Finished building for pkgB
Finished building for pkgA
Checking for author in test
Checking for author in test
Checking for author in mockpkg
Checking for author in test
Checking for author in test
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg has a source control
testpkg has bug reports URL
testpkg does not have a maintainer
testpkg has a website
testpkg source control detected via BugReports URL
testpkg has a source control
mockpkg has bug reports URL
mockpkg has a website
mockpkg does not have a source control
Checking for author in limma
Checking for author in limma
Checking for author in limma
Checking for author in limma
mockpkg: 0.00% of exported functions have examples
Using package's default risk definition.
Rendering report for mypkg
Rendering report for mypkg
Rendering report for mypkg
url_page: https://bioconductor.org/packages/3.20/bioc/html/limma.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
Failed to fetch page: https://bioconductor.org/packages/3.20/bioc/html/noarchive.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/archiveonly.html
url_page: https://bioconductor.org/packages/3.20/bioc/html/doesnotexist.html
Checking Bioconductor version: 3.17
Checking package version: 1.38.0 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 1.38.0 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 1.38.0 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking package version: 3.40.2 Date: 2005-10-14
Checking Bioconductor version: 3.18
Checking package version: 3.40.2 Date: 2006-10-04
Checking Bioconductor version: 3.19
Checking package version: 3.40.2 Date: 2007-10-08
Checking Bioconductor version: 3.17
Checking Bioconductor version: 3.18
Checking Bioconductor version: 3.19
Package URL not found on Bioconductor
Checking Bioconductor version: 3.17
Skipping Bioconductor version 3.17 due to error: Simulated error
Checking Bioconductor version: 3.18
Skipping Bioconductor version 3.18 due to error: Simulated error
Checking Bioconductor version: 3.19
Skipping Bioconductor version 3.19 due to error: Simulated error
Package URL not found on Bioconductor
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: ggplot2
No download data found or invalid format for: ggplot2
Could not fetch CRAN download data for package: nonexistent8package
No download data found or invalid format for: nonexistent8package
could not fetch download data for package: FakePackage123
No download data found for package: FakePackage123
No download data found for package: FakePackage123
could not fetch download data for package: FakePackage123
No download data found for package: EmptyDataPkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
No R folder found in the package source path for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Extracting exported function names for testpkg
Checking GitHub data for tidyverse/ggplot2...
Saving _problems/test-get_github_data-56.R
Checking GitHub data for /ggplot2...
Owner is NA or empty. Returning empty response.
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Checking GitHub data for tidyverse/ggplot2...
Failed to fetch commits: Mocked commits API failure
Checking GitHub data for tidyverse/non_existent_repo...
Failed to fetch repository details: Mocked API call failure
Repository not found: Not Found
No closed issues found.
No closed issues found.
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
NO INTERNAL_RSPM FOUND
Checking host package
Checking host package
Checking host package
Checking host package
Checking host package
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Package tarball saved at: D:\temp\2026_06_29_01_50_00_20080\Rtmpq4xvwd\file11c541c8615ab.tar.gz
Checking VersionedPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking VersionedPkg on CRAN...
Checking VersionedPkg on Bioconductor...
No VersionedPkg package found on Bioconductor
Attempting internal fallback download for VersionedPkg
Package tarball saved at: D:\temp\2026_06_29_01_50_00_20080\Rtmpq4xvwd\file11c54240d27e9.tar.gz
Checking test.package.0001 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking test.package.0001 on CRAN...
Checking test.package.0001 on Bioconductor...
Package tarball saved at: D:\temp\2026_06_29_01_50_00_20080\Rtmpq4xvwd\file11c5426e41308.tar.gz
Checking BiocPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking BiocPkg on CRAN...
Checking BiocPkg on Bioconductor...
Attempting internal fallback download for BiocPkg
Package tarball saved at: D:\temp\2026_06_29_01_50_00_20080\Rtmpq4xvwd\file11c5421722431.tar.gz
Checking SomePkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking SomePkg on CRAN...
CRAN download failed: CRAN download failed due to timeout
Checking SomePkg on Bioconductor...
Package tarball saved at: D:\temp\2026_06_29_01_50_00_20080\Rtmpq4xvwd\file11c5466b190b.tar.gz
Checking Biobase in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking Biobase on CRAN...
Checking Biobase on Bioconductor...
Package tarball saved at: D:\temp\2026_06_29_01_50_00_20080\Rtmpq4xvwd\file11c544d7c605d.tar.gz
Checking InternalPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking InternalPkg on CRAN...
Checking InternalPkg on Bioconductor...
No InternalPkg package found on Bioconductor
Attempting internal fallback download for InternalPkg
Package tarball saved at: D:\temp\2026_06_29_01_50_00_20080\Rtmpq4xvwd\file11c544c3de9e.tar.gz
Checking GhostPkg in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking GhostPkg on CRAN...
Checking GhostPkg on Bioconductor...
No GhostPkg package found on Bioconductor
Attempting internal fallback download for GhostPkg
Checking ggplot2 in configured repositories...
Download from configured repos failed: simulated: package not in configured repos
Checking ggplot2 on CRAN...
Package tarball saved at: D:\temp\2026_06_29_01_50_00_20080\Rtmpq4xvwd\file11c54445517ea.tar.gz
Checking nonexistentpkg in configured repositories...
Download from configured repos failed: simulated download failure
Checking nonexistentpkg on CRAN...
Checking nonexistentpkg on Bioconductor...
No nonexistentpkg package found on Bioconductor
Attempting internal fallback download for nonexistentpkg
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
No articles found on pubmed for ggplot2
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using custom risk definition.
Using package's default risk definition.
Using package's default risk definition.
Using package's default risk definition.
tools::Rd_db() failed for 'pkgB': there is no package called 'pkgB'
installing invalidPackage locally
installing mock locally
mock_package installed locally
mock installed locally
installing non locally
No such file or directory: non_existent_directory
installing mock locally
mock is already installed
installing fakepkg locally
fakepkg not installed locally
installing fakepkg locally
Local installation issue is: Error in remotes::install_local(pkg_source_path, dependencies = TRUE, : install failed
Package directory not found (no DESCRIPTION file found); returning original tarball.
getting package dependencies for testpkg
package dependencies successful for testpkg
package
1 bar
getting package dependencies for pkgname
package dependencies successful for pkgname
Starting lock file processing
Starting lock file processing
Finishing lock file processing
Starting lock file processing
Finishing lock file processing
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
running rcmdcheck for test.pkg
rcmdcheck for test.pkg failed. Read in the rcmdcheck output to see what went wrong:
unpacking file11c547e3773e.tar.gz locally
unpacked file11c547e3773e.tar.gz locally
unpacking file11c5437f079e4.tar.gz locally
unpacked file11c5437f079e4.tar.gz locally
unpacking test.package.0001 locally
unpacked test.package.0001 locally
unpacking file11c54625932ab.tar.gz locally
unpacked file11c54625932ab.tar.gz locally
unpacking file11c545527be3.tar.gz locally
unpacking file11c546fd077a5.tar.gz locally
unpacking file11c546c2d1ca9.tar.gz locally
unpacking file11c545d6e3912.tar.gz locally
unpacking package.tar.gz locally
unpacking here locally
untar note for here: skipping pax global extended headers
unpacked here locally
Output created: D:/temp/2026_06_29_01_50_00_20080/Rtmpq4xvwd/summary_report_mockpkg_0.1.0.html
Report will be written to: D:/temp/2026_06_29_01_50_00_20080/Rtmpq4xvwd/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp
Output created: /tmp/my-report.html
No output directory specified. Setting output to /tmp/render_root
Output created: /tmp/render_root/summary_report_mockpkg_0.1.0.html
No output directory specified. Setting output to /tmp/render_root_md
Output created: /tmp/render_root_md/summary_report_mockpkg_0.1.0.md
Report will be written to: D:/temp/2026_06_29_01_50_00_20080/Rtmpq4xvwd/file11c545dfb4f7/summary_report_pkgA_0.1.0.html
Output created: D:/temp/2026_06_29_01_50_00_20080/Rtmpq4xvwd/file11c545dfb4f7/summary_report_pkgA_0.1.0.html
Report will be written to: x/out/summary_report_pkgB_0.2.0.md
Output created: x/out/summary_report_pkgB_0.2.0.md
No output directory specified. Setting output to d:/Rcompile/CRANpkg/local/4.5/risk.assessr.Rcheck/tests/testthat
Output created: reports/summary_report_pkgC_0.3.0.html
Output created: base/out/report.html
Output created: base/report.md
Output created: base/something.html
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
══ Skipped tests (77) ══════════════════════════════════════════════════════════
• On CRAN (76): 'test-assess_pkg.R:66:5', 'test-assess_pkg.R:257:3',
'test-assess_pkg.R:408:3', 'test-assess_pkg.R:480:3',
'test-assess_pkg.R:600:3', 'test-assess_pkg.R:850:3',
'test-assess_pkg.R:928:3', 'test-badges.R:44:3',
'test-check_suggested_exp_funcs.R:2:3',
'test-check_suggested_exp_funcs.R:222:3', 'test-cran_packages.R:2:3',
'test-cran_packages.R:12:3', 'test-create_traceability_matrix.R:2:3',
'test-create_traceability_matrix.R:67:3',
'test-create_traceability_matrix.R:144:3',
'test-create_traceability_matrix.R:217:3', 'test-dependency_tree.R:539:1',
'test-dependency_tree.R:543:1', 'test-dependency_tree.R:607:1',
'test-dependency_tree.R:611:1', 'test-dependency_tree.R:1053:1',
'test-documentation_metrics.R:7:3', 'test-documentation_metrics.R:327:3',
'test-documentation_metrics.R:358:3', 'test-documentation_metrics.R:395:3',
'test-documentation_metrics.R:651:3', 'test-documentation_metrics.R:714:3',
'test-documentation_metrics.R:1013:3', 'test-documentation_metrics.R:1075:3',
'test-documentation_metrics.R:1249:3', 'test-documentation_metrics.R:1286:3',
'test-documentation_metrics.R:1332:3', 'test-documentation_metrics.R:1585:3',
'test-documentation_metrics.R:1668:3', 'test-documentation_metrics.R:1726:3',
'test-documentation_metrics.R:1772:3', 'test-documentation_metrics.R:1822:3',
'test-documentation_metrics.R:2371:3', 'test-documentation_metrics.R:2421:3',
'test-documentation_metrics.R:2480:3', 'test-documentation_metrics.R:2531:3',
'test-documentation_metrics.R:2775:3', 'test-documentation_metrics.R:2819:3',
'test-documentation_metrics.R:2872:3', 'test-documentation_metrics.R:2918:3',
'test-generate_html_report.R:917:3', 'test-get_exports.R:2:3',
'test-get_exports.R:54:3', 'test-get_exports.R:145:3',
'test-get_exports.R:229:3', 'test-get_exports.R:284:3',
'test-get_exports.R:337:3', 'test-get_exports.R:918:3',
'test-get_exports.R:970:3', 'test-get_exports.R:1061:3',
'test-get_exports.R:1145:3', 'test-get_exports.R:1200:3',
'test-get_exports.R:1253:3', 'test-install_package_local.R:5:3',
'test-parse_dcf_dependencies.R:10:3', 'test-parse_dcf_dependencies.R:54:3',
'test-parse_dcf_dependencies.R:104:3', 'test-reverse_dependencies.R:2:3',
'test-risk_assess_pkg.R:16:3', 'test-risk_assess_pkg.R:180:3',
'test-risk_assess_pkg.R:209:3', 'test-risk_assess_pkg.R:262:3',
'test-risk_assess_pkg.R:288:3', 'test-risk_assess_pkg.R:327:3',
'test-risk_assess_pkg.R:390:3', 'test-skip_conditions.R:2:3',
'test-skip_conditions.R:8:5', 'test-skip_conditions.R:17:5',
'test-skip_conditions.R:26:5', 'test-skip_conditions.R:35:3',
'test-skip_conditions.R:42:3'
• Skipping test because CRAN is available (1):
'test-parse_dcf_dependencies.R:136:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-get_github_data.R:56:3'): Valid repository returns correct data ──
Expected `result$average_issue_close_time` >= 846.
Actual comparison: 844.4 < 846.0
Difference: -1.6 < 0
[ FAIL 1 | WARN 0 | SKIP 77 | PASS 1887 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64