## ----include = FALSE----------------------------------------------------------
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)

## ----setup--------------------------------------------------------------------
library(abba)

## ----submit_job, eval=FALSE---------------------------------------------------
# abba_rslauncher_submit_job_local(
#   "/home/mike.stackhouse/repos/abba/test_programs/test_program.R",
#   log_path = "/home/mike.stackhouse/test_logs"
#   )
# # [1] "TG9jYWw6bU9YcFMzeEZacVFaa1lLc2pRak1LZz09"
# abba_rslauncher_submit_logrx_job_local(
#   "/home/mike.stackhouse/repos/abba/test_programs/test_program.R",
#   log_path = "/home/mike.stackhouse/test_logs"
#   )
# # [1] "TG9jYWw6VG5leWVvWFFseEN5M0JRVFptVjVIUT09"

## ----get_status, eval=FALSE---------------------------------------------------
# abba_rslauncher_get_job_status_local("TG9jYWw6bU9YcFMzeEZacVFaa1lLc2pRak1LZz09")
# # TG9jYWw6bU9YcFMzeEZacVFaa1lLc2pRak1LZz09
# #                             "Finished"

## ----watch_job, eval=FALSE----------------------------------------------------
# abba_rslauncher_get_job_log_local("TG9jYWw6bU9YcFMzeEZacVFaa1lLc2pRak1LZz09")
# # [[1]]
# # [1] "[1] 4"                   "Warning message:"        "This is a test warning " "La-di-da"

## ----get_logrx_log, eval=FALSE------------------------------------------------
# abba_rslauncher_get_job_log_local("TG9jYWw6VG5leWVvWFFseEN5M0JRVFptVjVIUT09")
# # [[1]]
# #   [1] "--------------------------------------------------------------------------------"
# #   [2] "-                                logrx Metadata                                -"
# #   [3] "--------------------------------------------------------------------------------"
# #   [4] "This log was generated using logrx 0.3.0"
# #   [5] "logrx package version: 0.3.0"
# #   [6] "logrx build: RSPM (R 4.2.0)"
# #   [7] "logrx link to repository: https://github.com/pharmaverse/logrx"
# #   [8] "--------------------------------------------------------------------------------"
# #   [9] "-                          User and File Information                           -"
# #  [10] "--------------------------------------------------------------------------------"
# #  [11] "User: mike.stackhouse"
# #  [12] "File Name: test_program.R"
# #  [13] "File Path: /home/mike.stackhouse/repos/abba/test_programs"
# #  [14] "File HashSum: 1ba9a7fc3cf91e3cce43d38a5bf1d800900f1c92"
# #  [15] "--------------------------------------------------------------------------------"
# #  [16] "-                             Session Information                              -"
# #  [17] "--------------------------------------------------------------------------------"
# #  [18] "- Session info ---------------------------------------------------------------"
# #  [19] " setting  value"
# #  [20] " version  R version 4.2.1 (2022-06-23)"
# #  [21] " os       Ubuntu 20.04.6 LTS"
# #  [22] " system   x86_64, linux-gnu"
# #  [23] " ui       X11"
# #  [24] " language (EN)"
# #  [25] " collate  C"
# #  [26] " ctype    C"
# #  [27] " tz       Etc/UTC"
# #  [28] " date     2024-03-29"
# #  [29] " pandoc   2.5 @ /usr/bin/pandoc"
# #  [30] ""
# #  [31] "- Packages -------------------------------------------------------------------"
# #  [32] " package     * version date (UTC) lib source"
# #  [33] " cli           3.6.2   2023-12-11 [1] RSPM (R 4.2.0)"
# #  [34] " digest        0.6.34  2024-01-11 [1] RSPM (R 4.2.0)"
# #  [35] " dplyr         1.1.4   2023-11-17 [1] RSPM (R 4.2.0)"
# #  [36] " ellipsis      0.3.2   2021-04-29 [1] RSPM (R 4.2.0)"
# #  [37] " fansi         1.0.6   2023-12-08 [1] RSPM (R 4.2.0)"
# #  [38] " fastmap       1.1.1   2023-02-24 [1] RSPM (R 4.2.0)"
# #  [39] " generics      0.1.3   2022-07-05 [1] RSPM (R 4.2.0)"
# #  [40] " glue          1.7.0   2024-01-09 [1] RSPM (R 4.2.0)"
# #  [41] " htmltools     0.5.7   2023-11-03 [1] RSPM (R 4.2.0)"
# #  [42] " httpuv        1.6.14  2024-01-26 [1] RSPM (R 4.2.0)"
# #  [43] " later         1.3.2   2023-12-06 [1] RSPM (R 4.2.0)"
# #  [44] " lifecycle     1.0.4   2023-11-07 [1] RSPM (R 4.2.0)"
# #  [45] " logrx       * 0.3.0   2023-10-17 [1] RSPM (R 4.2.0)"
# #  [46] " magrittr      2.0.3   2022-03-30 [1] RSPM (R 4.2.0)"
# #  [47] " mime          0.12    2021-09-28 [1] RSPM (R 4.2.0)"
# #  [48] " miniUI        0.1.1.1 2018-05-18 [1] RSPM (R 4.2.0)"
# #  [49] " pillar        1.9.0   2023-03-22 [1] RSPM (R 4.2.0)"
# #  [50] " pkgconfig     2.0.3   2019-09-22 [1] RSPM (R 4.2.0)"
# #  [51] " promises      1.2.1   2023-08-10 [1] RSPM (R 4.2.0)"
# #  [52] " purrr         1.0.2   2023-08-10 [1] RSPM (R 4.2.0)"
# #  [53] " R6            2.5.1   2021-08-19 [1] RSPM (R 4.2.0)"
# #  [54] " Rcpp          1.0.12  2024-01-09 [1] RSPM (R 4.2.0)"
# #  [55] " rlang         1.1.3   2024-01-10 [1] RSPM (R 4.2.0)"
# #  [56] " rstudioapi    0.15.0  2023-07-07 [1] RSPM (R 4.2.0)"
# #  [57] " sessioninfo   1.2.2   2021-12-06 [1] RSPM (R 4.2.0)"
# #  [58] " shiny         1.8.0   2023-11-17 [1] RSPM (R 4.2.0)"
# #  [59] " stringi       1.8.3   2023-12-11 [1] RSPM (R 4.2.0)"
# #  [60] " stringr       1.5.1   2023-11-14 [1] RSPM (R 4.2.0)"
# #  [61] " tibble        3.2.1   2023-03-20 [1] RSPM (R 4.2.0)"
# #  [62] " tidyr         1.3.1   2024-01-24 [1] RSPM (R 4.2.0)"
# #  [63] " tidyselect    1.2.0   2022-10-10 [1] RSPM (R 4.2.0)"
# #  [64] " utf8          1.2.4   2023-10-22 [1] RSPM (R 4.2.0)"
# #  [65] " vctrs         0.6.5   2023-12-01 [1] RSPM (R 4.2.0)"
# #  [66] " waiter        0.2.5   2022-01-03 [1] RSPM (R 4.2.0)"
# #  [67] " xtable        1.8-4   2019-04-21 [1] RSPM (R 4.2.0)"
# #  [68] ""
# #  [69] " [1] /home/mike.stackhouse/R/x86_64-pc-linux-gnu-library/4.2"
# #  [70] " [2] /opt/R/4.2.1/lib/R/library"
# #  [71] ""
# #  [72] "- External software ----------------------------------------------------------"
# #  [73] " setting        value"
# #  [74] " cairo          1.16.0"
# #  [75] " cairoFT"
# #  [76] " pango          1.44.7"
# #  [77] " png            1.6.37"
# #  [78] " jpeg           8.0"
# #  [79] " tiff           LIBTIFF, Version 4.1.0"
# #  [80] " tcl            8.6.10"
# #  [81] " curl           7.68.0"
# #  [82] " zlib           1.2.11"
# #  [83] " bzlib          1.0.8, 13-Jul-2019"
# #  [84] " xz             5.2.4"
# #  [85] " PCRE           10.34 2019-11-21"
# #  [86] " ICU            66.1"
# #  [87] " TRE            TRE 0.8.0 R_fixes (BSD)"
# #  [88] " iconv          glibc 2.31"
# #  [89] " readline       8.0"
# #  [90] " BLAS           /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0"
# #  [91] " lapack         /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.9.0"
# #  [92] " lapack_version 3.9.0"
# #  [93] ""
# #  [94] "- Python configuration -------------------------------------------------------"
# #  [95] " Python is not available"
# #  [96] ""
# #  [97] "------------------------------------------------------------------------------"
# #  [98] "--------------------------------------------------------------------------------"
# #  [99] "-                               Masked Functions                               -"
# # [100] "--------------------------------------------------------------------------------"
# # [101] "function `args` from {package:base} by .GlobalEnv"
# # [102] "function `plot` from {package:base} by package:graphics"
# # [103] "function `body<-` from {package:base} by package:methods"
# # [104] "function `kronecker` from {package:base} by package:methods"
# # [105] "--------------------------------------------------------------------------------"
# # [106] "-                          Used Package and Functions                          -"
# # [107] "--------------------------------------------------------------------------------"
# # [108] "{package:base} print"
# # [109] "{package:base} warning"
# # [110] "{package:base} message"
# # [111] "--------------------------------------------------------------------------------"
# # [112] "-                         Program Run Time Information                         -"
# # [113] "--------------------------------------------------------------------------------"
# # [114] "Start time: 2024-03-29 18:34:59 UTC"
# # [115] "End time: 2024-03-29 18:34:59 UTC"
# # [116] "Run time: 0 seconds"
# # [117] "--------------------------------------------------------------------------------"
# # [118] "-                             Errors and Warnings                              -"
# # [119] "--------------------------------------------------------------------------------"
# # [120] "Errors:"
# # [121] "\t"
# # [122] ""
# # [123] "Warnings:"
# # [124] "\tThis is a test warning"
# # [125] "--------------------------------------------------------------------------------"
# # [126] "-                         Messages, Output, and Result                         -"
# # [127] "--------------------------------------------------------------------------------"
# # [128] "Messages:"
# # [129] "\tLa-di-da"
# # [130] "Output:"
# # [131] "\t[1] 4"
# # [132] ""
# # [133] "Result:"
# # [134] "\tNULL"
# # [135] "--------------------------------------------------------------------------------"
# # [136] "-                               Log Output File                                -"
# # [137] "--------------------------------------------------------------------------------"
# # [138] "Log name: test_program.log"
# # [139] "Log path: /home/mike.stackhouse/repos/abba/test_programs"