batchtma: Batch Effect Adjustments
Different adjustment methods for batch effects in biomarker data, such as from tissue microarrays. Some methods attempt to retain differences between batches that may be due to between-batch differences in "biological" factors that influence biomarker values.
| Version: | 0.1.6 |
| Imports: | broom (≥ 0.7.0), dplyr (≥ 1.0.0), geepack, ggplot2, limma, nnet, purrr (≥ 0.3.0), quantreg, rlang (≥ 0.4.0), stringr, tibble, tidyr (≥ 1.1.0), magrittr |
| Suggests: | knitr, rmarkdown, tidyverse |
| Published: | 2021-12-06 |
| DOI: | 10.32614/CRAN.package.batchtma |
| Author: | Konrad Stopsack 
[aut, cre],
Travis Gerke
[aut] |
| Maintainer: | Konrad Stopsack <stopsack at post.harvard.edu> |
| License: | GPL-3 |
| URL: | https://stopsack.github.io/batchtma/, https://github.com/stopsack/batchtma |
| NeedsCompilation: | no |
| CRAN checks: | batchtma results |
Documentation:
| Reference manual: | batchtma.pdf |
| Vignettes: |
Get Started: Methods to address batch effects |
Downloads:
| Package source: | batchtma_0.1.6.tar.gz |
| Windows binaries: | r-devel: batchtma_0.1.6.zip, r-release: batchtma_0.1.6.zip, r-oldrel: batchtma_0.1.6.zip |
| macOS binaries: | r-devel (arm64): batchtma_0.1.6.tgz, r-release (arm64): batchtma_0.1.6.tgz, r-oldrel (arm64): batchtma_0.1.6.tgz, r-devel (x86_64): batchtma_0.1.6.tgz, r-release (x86_64): batchtma_0.1.6.tgz, r-oldrel (x86_64): batchtma_0.1.6.tgz |
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