couplr 1.4.0

Animation coverage

• lap_animate() now covers every method that assignment() accepts. Ten new step-by-step traces ship: auction_gs, ramshaw_tarjan, ssap_bucket, hk01, csflow, cycle_cancel, push_relabel, csa, orlin, network_simplex. animated_methods() returns all 20 method strings.
• Per-frame parity testing. Every registered trace is exercised by a parametric testthat suite (tests/testthat/test-trace-parity.R) on a battery of small cost matrices including forbidden cells. Each frame’s matching is validated for in-range entries, no double-bookings, and no use of forbidden edges; the final-frame total is compared to the C++ oracle within tolerance.
• Shared trace infrastructure. New internal helpers R/trace_helpers_frame.R (make_frame(), make_meta(), prepare_cost_work(), matching_total_cost(), validate_cost_input()) and R/trace_helpers_mcf.R (min-cost-flow graph, residual edges, Dijkstra with Johnson potentials, Bellman-Ford, negative-cycle finder, push/extract). Used by all min-cost-flow traces.

Bug fixes (correctness)

• prepare_cost_matrix.cpp: entries equal to +Inf were treated as regular very-large costs rather than forbidden, which made cmax become Inf and silently skipped the maximize flip. Result: assignment(method = X, maximize = TRUE) on matrices containing Inf returned the minimizing answer for any solver routing through prepare_cost_matrix_impl (auction, auction_scaled, sap, csflow, hk01, bruteforce). Now NA and any non-finite value are marked forbidden consistently.
• lap_solve_orlin and lap_solve_network_simplex_wrapper: the R-side wrapper used work[is.na(work)] <- Inf which missed the -Inf produced by negating +Inf in maximize mode, letting forbidden cells slip through as extreme-cost real edges. Fixed to work[!is.finite(work)] <- Inf.
• network_simplex initial spanning tree: the greedy initialiser in ns_init.h built a partial matching (any row that couldn’t claim a fresh column was left unmatched) and connected unmatched columns to row
  0. The resulting starting basis violated flow conservation, and pivots could not recover a perfect matching even when one existed - e.g. on a 5x5 cost matrix with two forbidden cells under maximize, assignment(method = "network_simplex") returned an infeasible result with one row unmatched. Fixed by adding an augmenting-path repair after the greedy pass: every still-unmatched row runs BFS for an augmenting path on the allowed-edge bipartite graph, extending the initial matching to a perfect matching whenever one exists.

couplr 1.3.3

Solver internals

• Hungarian split into O(n^3) SAP + O(n^4) Munkres. method = "hungarian" now uses the shortest-augmenting-path solver shared with JV; the original O(n^4) Munkres implementation remains available as method = "munkres". At n = 2000 the new Hungarian runs orders of magnitude faster than 1.3.2.
• LAPJV warm-start (column reduction + augmenting reduction) added to the JV core for square inputs. Reduces JV / duals solve time at n >= 500.
• CSA shares dual potentials across epsilon-scaling phases. Removes the cold restart between phases that previously dominated CSA runtime at n >= 500.
• Auction tie-breaker tweak cached in auction and auction_gs. Cleaner inner loop; no behaviour change.
• solve_auction_scaled collapsed into a thin wrapper over scaled_params (~200 lines removed); behaviour identical.
• Gabow-Tarjan: bucket-array Step 2 reinstated per the 1989 paper (G&T’s r > bn pruning is the algorithm, not a wart); added the 6n pruning heuristic from p.9.

Documentation

• paper/benchmark-table.csv and paper/scaling-results.csv re-measured on the current development machine for n <= 2000 (per-method table) and n_total <= 2000 (cross-package table). Larger-n rows in both files are carried over from the previous machine and not directly comparable.

couplr 1.3.2

Test infrastructure

• Resubmission of 1.3.1 to address a win-builder r-devel pretest failure (exit code -1073741819 / access violation) in test-lap-solve-batch-coverage.R. Debian r-devel, local r-release, and local R CMD check --as-cran all pass; the crash did not reproduce off win-builder.
• Disabled testthat parallel execution (Config/testthat/parallel: true removed from DESCRIPTION) to eliminate cross-file worker-state leakage as a possible cause of the win-builder crash.
• Added a defensive skip_on_cran() at the top of test-lap-solve-batch-coverage.R. Equivalent coverage is exercised off-CRAN by test-lap-solve-batch-coverage-2.R, test-lap-solve-batch-coverage-3.R, test-lap-solve-batch-extended.R, test-batch-coverage-final.R, test-batch-processing.R, and test-batch-kbest-extended.R.

couplr 1.3.1

Behaviour changes

• Mahalanobis distance now uses the pooled within-group covariance by default. Previously the default was the overall-sample covariance of rbind(left, right). The pooled within-group estimator ((n_L-1)*S_L + (n_R-1)*S_R) / (n_L+n_R-2) is the convention used by optmatch::match_on() and aligns Mahalanobis behaviour across the matching packages a user is likely to compare against. Users who relied on the old default can recover it explicitly with match_couples(..., sigma = cov(rbind(left[, vars], right[, vars]))). The previous docstring already documented the default as “pooled covariance”; this release makes the code match the documentation.

couplr 1.3.0

New Features

Optimal Full Matching

• full_match() gains method = "optimal" (new default) using a min-cost max-flow solver (Dijkstra + Johnson potentials) that finds the globally optimal group assignment minimizing total distance:
  • Standard lower bound transformation enforces min_controls per group
  • Automatic transposition when n_left > n_right
  • New C++ solver: solve_full_matching.cpp (self-contained MCMF)
  • method = "greedy" preserved for fast approximate matching

Vignette Updates

• Getting Started: Added full matching section with full_match() example
• Matching Workflows: New “Full Matching (Variable-Ratio Groups)” section covering optimal vs greedy, constraints, weights, and comparison table
• Comparison: Updated feature table and all sections to reflect couplr’s full matching support (previously listed as “No”)

couplr 1.2.0

New Features

Full Matching

• New full_match() function assigns every unit to a matched group with variable ratios (1:k or k:1):
  • Greedy group formation: match each left to nearest right, then assign remaining right units to nearest matched left
  • Caliper support: caliper (absolute) or caliper_sd (SD-based)
  • Control group size constraints: min_controls, max_controls
  • Weights inversely proportional to group size
  • Returns full_matching_result S3 class

Coarsened Exact Matching (CEM)

• New cem_match() function implements coarsened exact matching:
  • Coarsens continuous variables into bins (Sturges, FD, Scott, or custom)
  • Exact matching on coarsened values with stratum-based weights
  • Support for categorical grouping variables via grouping parameter
  • Custom cutpoints per variable via cutpoints parameter
  • Returns cem_result S3 class with matched units and strata summary

Subclassification

• New subclass_match() function divides units into propensity score strata:
  • Quantile-based stratification with configurable number of subclasses
  • Supports pre-computed PS, pre-fitted models, or formula interface
  • Target estimands: ATT, ATE, ATC with appropriate weighting
  • Returns subclass_result S3 class with subclass summary

Output Layer & Ecosystem Integration

• New match_data() generic converts any couplr result to analysis-ready format with treatment, weights, subclass, and distance columns. Methods for all result types (matching, full, CEM, subclass).
• New as_matchit() converter creates matchit-class objects from couplr results, enabling interop with cobalt, marginaleffects, and other MatchIt ecosystem packages.
• cobalt bal.tab() methods for all couplr result types. Requires cobalt package (in Suggests).

Mahalanobis Distance Improvements

• Robust singularity check using rcond() instead of fragile det() == 0
• Custom sigma parameter in match_couples(), greedy_couples(), and compute_distance_matrix() for user-supplied covariance matrices
• Vectorized computation replacing nested R for-loops for ~10x speedup

S3 Generics

• balance_diagnostics() and join_matched() are now S3 generics with methods for all result types. Existing code is 100% backward-compatible.

New Functions

• full_match() - Variable-ratio full matching
• cem_match() - Coarsened exact matching
• subclass_match() - Propensity score subclassification
• match_data() - Unified analysis-ready output
• as_matchit() - Convert to MatchIt format

couplr 1.1.0

New Features

Ratio and Replacement Matching

• k:1 ratio matching via ratio parameter in match_couples() and greedy_couples(). Matches k control units to each treated unit by replicating the cost matrix, then deduplicates assignments.
• With-replacement matching via replace parameter. Each treated unit independently selects its nearest control, allowing controls to be reused across multiple treated units.

Propensity Score Matching

• New ps_match() function wraps match_couples() with logistic regression:
  • Accepts a formula or pre-fitted glm object
  • Matches on the logit of propensity scores with a caliper
  • Default caliper: 0.2 SD of logit(PS) (Rosenbaum and Rubin recommendation)
  • Returns matching_result with PS model metadata

Cardinality Matching

• New cardinality_match() function maximizes sample size subject to balance constraints:
  • Starts with a full optimal match, then iteratively prunes imbalanced pairs
  • Balance threshold via max_std_diff (default: 0.1 for excellent balance)
  • Configurable pruning speed with batch_fraction
  • Returns pruning diagnostics: iterations, pairs removed, final balance

Sensitivity Analysis

• New sensitivity_analysis() function implements Rosenbaum bounds:
  • Tests sensitivity of matched comparisons to hidden bias
  • Uses Wilcoxon signed-rank statistic with upper/lower p-value bounds
  • Reports critical gamma (smallest gamma at which significance is lost)
  • S3 methods: print(), summary(), plot()

Visualization

• autoplot() methods for ggplot2-based visualizations (requires ggplot2):
  • autoplot.matching_result(): histogram, density, or ecdf of distances
  • autoplot.balance_diagnostics(): love plot, histogram, or variance ratio plot
  • autoplot.sensitivity_analysis(): gamma vs p-value curve
• Enhanced summary.matching_result() now reports match rate and distance percentiles

New Functions

• ps_match() - Propensity score matching with logit caliper
• cardinality_match() - Balance-constrained cardinality matching
• sensitivity_analysis() - Rosenbaum bounds sensitivity analysis

Tests

• Added 58 new tests across 7 test files
• All 4916 tests passing across platforms

couplr 1.0.7

Bug Fixes

• Fixed undefined behavior (UB) in Gabow-Tarjan algorithm: replaced left bit-shift of potentially negative values with multiplication to avoid sanitizer errors on M1-SAN checks
• Fixed namespace conflict with select() in vignettes by using explicit dplyr::select() to prevent masking by MASS or other packages

couplr 1.0.6

Documentation

• Added Overview section to algorithms vignette with audience and prerequisites
• Fixed workflow diagram dark mode text handling in matching-workflows vignette
• Improved SVG theme-awareness for multi-line text labels
• Removed grid lines from matching-workflows plots for cleaner appearance
• Added threshold labels to balance comparison plot

couplr 1.0.0

Major New Features (2025-11-19 Update)

Automatic Preprocessing and Scaling

The package now includes intelligent preprocessing to improve matching quality:

• New auto_scale parameter in match_couples() and greedy_couples() enables automatic preprocessing
• Variable health checks detect and handle problematic variables:
  • Constant columns (SD = 0) are automatically excluded with warnings
  • High missingness (>50%) triggers warnings
  • Extreme skewness (|skewness| > 2) is flagged
• Smart scaling method selection analyzes data and recommends:
  • “robust” scaling using median and MAD (resistant to outliers)
  • “standardize” for traditional mean-centering and SD scaling
  • “range” for min-max normalization
• New preprocess_matching_vars() function for manual preprocessing control
• Categorical variable encoding for binary and ordered factors

Balance Diagnostics

Comprehensive tools to assess matching quality:

• New balance_diagnostics() function computes multiple balance metrics:
  • Standardized differences: (mean_left - mean_right) / pooled_sd
  • Variance ratios: SD_left / SD_right
  • Kolmogorov-Smirnov tests for distribution comparison
  • Overall balance metrics (mean, max, % large imbalance)
• Quality thresholds with interpretation:
  • |Std Diff| < 0.10: Excellent balance
  • |Std Diff| 0.10-0.25: Good balance
  • |Std Diff| 0.25-0.50: Acceptable balance
  • |Std Diff| > 0.50: Poor balance
• Per-block statistics with quality ratings when blocking is used
• balance_table() creates publication-ready formatted tables
• Informative print methods with interpretation guides

Joined Matched Dataset Output

Create analysis-ready datasets directly from matching results:

• New join_matched() function automates data preparation:
  • Joins matched pairs with original left and right datasets
  • Eliminates manual data wrangling after matching
  • Select specific variables via left_vars and right_vars parameters
  • Customizable suffixes (default: _left, _right) for overlapping columns
  • Optional metadata: pair_id, distance, block_id
  • Works with both optimal and greedy matching
• Broom-style augment() method for tidymodels integration:
  • S3 method following broom package conventions
  • Sensible defaults for quick exploration
  • Supports all join_matched() parameters
• Flexible output control:
  • include_distance - Include/exclude matching distance
  • include_pair_id - Include/exclude sequential pair IDs
  • include_block_id - Include/exclude block identifiers
  • Custom ID column support via left_id and right_id
  • Clean column ordering: pair_id → IDs → distance → block → variables

Precomputed and Reusable Distances

Performance optimization for exploring multiple matching strategies:

• New compute_distances() function precomputes and caches distance matrices:
  • Compute distances once, reuse across multiple matching operations
  • Store complete metadata: variables, distance metric, scaling method, timestamps
  • Preserve original datasets for seamless integration with join_matched()
  • Enable rapid exploration of different matching parameters
  • Performance improvement: ~60% faster when trying multiple matching strategies
• Distance objects (S3 class distance_object):
  • Self-contained: cost matrix, IDs, metadata, original data
  • Works with both match_couples() and greedy_couples()
  • Pass as first argument instead of datasets: match_couples(dist_obj, max_distance = 5)
  • Informative print and summary methods with distance statistics
• Constraint modification via update_constraints():
  • Apply new max_distance or calipers without recomputing distances
  • Creates new distance object following copy-on-modify semantics
  • Experiment with different constraints efficiently
• Backward compatible integration:
  • Modified function signatures: match_couples(left, right = NULL, vars = NULL, ...)
  • Automatically detects distance objects vs. datasets
  • All existing code continues to work unchanged

Parallel Processing

Speed up blocked matching with multi-core processing:

• New parallel parameter in match_couples() and greedy_couples():
  • Enable with parallel = TRUE for automatic configuration
  • Specify plan with parallel = "multisession" or other future plan
  • Works with any number of blocks - automatically determines if beneficial
  • Gracefully falls back if future packages not installed
• Powered by the future package:
  • Cross-platform support (Windows, Unix/Mac, clusters)
  • Respects user-configured parallel backends
  • Automatic worker management
  • Clean restoration of original plan after execution
• Performance:
  • Best for 10+ blocks with 50+ units per block
  • Speedup scales with number of cores and complexity
  • Minimal overhead for small problems
• Integration:
  • Works with all blocking methods (exact, fuzzy, clustering)
  • Compatible with distance caching from Step 4
  • Supports all matching parameters (constraints, calipers, scaling)

Fun Error Messages and Cost Checking

Like testthat, couplr makes errors light, memorable, and helpful with couple-themed messages:

• New check_costs parameter (default: TRUE) in match_couples() and greedy_couples():
  • Automatically checks distance distributions before matching
  • Provides friendly, actionable warnings for common problems
  • Set to FALSE to skip checks in production code
• Fun couple-themed error messages throughout the package:
  • 💔 “No matches made - can’t couple without candidates!”
  • 🔍 “Your constraints are too strict. Love can’t bloom in a vacuum!”
  • ✨ Helpful suggestions: “Try increasing max_distance or relaxing calipers”
  • 💖 Success messages: “Excellent balance! These couples are well-matched!”
• Automatic problem detection:
  • Too many zeros: Warns about duplicates or identical values (>10% zero distances)
  • Extreme costs: Detects skewed distributions (99th percentile > 10x the 95th)
  • Many forbidden pairs: Warns when constraints eliminate >50% of valid pairs
  • Constant distances: Alerts when all distances are identical
  • Constant variables: Detects and excludes variables with no variation
• New diagnostic function diagnose_distance_matrix():
  • Comprehensive analysis of cost distributions
  • Variable-specific problem detection
  • Actionable suggestions for fixes
  • Quality rating (good/fair/poor)
• Emoji control: Disable with options(couplr.emoji = FALSE) if preferred
• Philosophy: Errors should be less intimidating, more memorable, and provide clear guidance

New Functions

• preprocess_matching_vars() - Main preprocessing orchestrator
• balance_diagnostics() - Comprehensive balance assessment
• balance_table() - Formatted balance tables for reporting
• join_matched() - Create analysis-ready datasets from matching results
• augment.matching_result() - Broom-style interface for joined data
• compute_distances() - Precompute and cache distance matrices
• update_constraints() - Modify constraints on distance objects
• is_distance_object() - Type checking for distance objects
• diagnose_distance_matrix() - Comprehensive distance diagnostics
• check_cost_distribution() - Check for distribution problems
• Added robust scaling method using median and MAD

Documentation & Examples

• examples/auto_scale_demo.R - 5 preprocessing demonstrations
• examples/balance_diagnostics_demo.R - 6 balance diagnostic examples
• examples/join_matched_demo.R - 8 joined dataset demonstrations
• examples/distance_cache_demo.R - Distance caching and reuse examples
• examples/parallel_matching_demo.R - 7 parallel processing examples
• examples/error_messages_demo.R - 10 fun error message demonstrations
• Complete implementation documentation (claude/IMPLEMENTATION_STEP1.md through STEP6.md)
• All functions have full Roxygen documentation

Tests

• Added 34+ new tests (10 for preprocessing, 11 for balance diagnostics, 13 for joined datasets, tests for distance caching)
• All tests passing with full backward compatibility

Major Changes (Initial 1.0.0 Release)

Package Renamed: lapr → couplr

The package has been renamed from lapr to couplr to better reflect its purpose as a general pairing and matching toolkit.

couplr = Optimal pairing and matching via linear assignment

Clean 1.0.0 Release

First official stable release with clean, well-organized codebase.

New Organization

R Code

• Eliminated 3 redundant files
• Consistent morph_* naming prefix
• Two-layer API: assignment() (low-level) + lap_solve() (tidy)
• 10 well-organized files (down from 13)

C++ Code

• Modular subdirectory structure:
  • src/core/ - Utilities and headers
  • src/interface/ - Rcpp exports
  • src/solvers/ - 14 LAP algorithms
  • src/gabow_tarjan/ - Gabow-Tarjan solver
  • src/morph/ - Image morphing

Features

Solvers

Hungarian, Jonker-Volgenant, Auction (3 variants), SAP/SSP, SSAP-Bucket, Cost-scaling, Cycle-cancel, Gabow-Tarjan, Hopcroft-Karp, Line-metric, Brute-force, Auto-select

High-Level

✅ Tidy tibble interface ✅ Matrix & data frame inputs
✅ Grouped data frames ✅ Batch solving + parallelization ✅ K-best solutions (Murty, Lawler) ✅ Rectangular matrices ✅ Forbidden assignments (NA/Inf) ✅ Maximize/minimize ✅ Pixel morphing visualization

API

• lap_solve() - Main tidy interface
• lap_solve_batch() - Batch solving
• lap_solve_kbest() - K-best solutions
• assignment() - Low-level solver
• Utilities: get_total_cost(), as_assignment_matrix(), etc.
• Visualization: pixel_morph(), pixel_morph_animate()

Development history under “lapr” available in git log before v1.0.0.