dsp 1.7.0
- Added a
coda::as.mcmc() method for fitted
dsp objects, so that the convergence diagnostics and
plotting functions in coda can be applied directly.
Parameters are flattened to one column per index, named so that
individual time points can be addressed, and the result records the
sampler’s iteration index, including burn-in and thinning.
- Added
is.dsp() and documented the dsp
class, including the components of a fitted object and their
dimensions.
plot() now works without an explicit type,
defaulting to "mu". The default was previously unreachable
because the method tested whether the argument had been supplied rather
than testing its value. Supplying NULL, an unrecognised
name, a vector or a non-character value now gives one message naming the
quantities the fitted object holds.
- Removed
RemoteType, RemotePkgRef and
RemoteUrl from DESCRIPTION, which were left behind by a
local installation.
- Removed two unused internal functions,
getEffSize() and
ergMean().
dsp 1.6.0
- Fixed random number generation so that
set.seed
controls results; btf_nb reset the seed and the state
sampler drew from a separate stream.
- Added a
seed argument to dsp_fit.
- Fixed
r_user, which did not hold the overdispersion
parameter fixed as documented.
- Negative binomial models now use the faster Polya-Gamma sampler when
the overdispersion is integer valued.
dsp_spec no longer accepts r_init and
r_sample directly; both are set through
r_user.
- Failed Cholesky factorizations are now detected and redrawn with a
warning, rather than returning invalid states.
- Fixed plot method dropping every changepoint after the first and
drawing them
D observations early.
- Fixed pluralization of “degree” in the print method.
- Documented the
slice and mh overdispersion
samplers as experimental.
dsp 1.5.1
- minor changes to colors used in plot for consistency
dsp 1.5.0
dsp_spec now abstracts overdispersion sampling from the
user by simplifying to options to default or Poisson approximation.
dsp 1.4.1
- Changed typo in print method for family “negbinomial”
dsp 1.4.0
- Changed argument name t01 to times for consistency
- Changed variable name yhat to ypred for correctness
dsp 1.3.0
- Fixed inconsistencies in model specification family names.
- Enhanced the plotting method.
dsp 1.2.0
dsp 1.1.0
dsp 1.0.0