geneSLOPE: Genome-Wide Association Study with SLOPE
Genome-wide association study (GWAS) performed with SLOPE,
short for Sorted L-One Penalized Estimation, a
method for estimating the vector of coefficients in linear model.
In the first step of GWAS, SNPs are clumped according to their correlations and
distances. Then, SLOPE is performed on data where each clump has
one representative.
| Version: |
0.38.3 |
| Depends: |
R (≥ 3.1.3), SLOPE |
| Imports: |
ggplot2, bigmemory, grid, utils, stats |
| Suggests: |
shiny, knitr, rmarkdown, testthat |
| Published: |
2025-06-20 |
| Author: |
Damian Brzyski [aut],
Christine Peterson [aut],
Emmanuel J. Candes [aut],
Malgorzata Bogdan [aut],
Chiara Sabatti [aut],
Piotr Sobczyk [cre, aut] |
| Maintainer: |
Piotr Sobczyk <pj.sobczyk at gmail.com> |
| BugReports: |
https://github.com/psobczyk/geneSLOPE/issues |
| License: |
GPL-3 |
| URL: |
https://github.com/psobczyk/geneSLOPE |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
geneSLOPE results |
Documentation:
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