The iRfcb
R package offers a suite of tools for managing
and performing quality control on plankton data generated by the Imaging FlowCytobot
(IFCB). It streamlines the processing and analysis of IFCB data,
facilitating the preparation of IFCB data and images for publication
(e.g. in GBIF, OBIS, EMODNet, SHARK or EcoTaxa). It is especially useful
for researchers using, or partly using, the MATLAB ifcb-analysis
package.
You can install the package from GitHub using the
remotes
package:
# install.packages("remotes")
::install_github("EuropeanIFCBGroup/iRfcb") remotes
Some functions in iRfcb
require Python. You can download
Python from the official website: python.org/downloads. For
more details, please visit the project’s webpage.
For a detailed overview of all available iRfcb
functions, please visit the reference section:
Explore the key features and capabilities of iRfcb
through the tutorials:
iRfcb
is designed for integration into IFCB data
processing pipelines. For an example, see its implementation in the
following project:
For more details and the latest updates, visit the GitHub repository.
This package is licensed under the MIT License.