netmhc2pan: Interface to 'NetMHCIIpan'
The field of immunology benefits from software that can predict which peptide sequences trigger an immune response. 'NetMHCIIpan' is a such a tool: it predicts the binding strength of a short peptide to a Major Histocompatibility Complex class II (MHC-II) molecule. 'NetMHCIIpan' can be used from a web server at <https://services.healthtech.dtu.dk/services/NetMHCIIpan-3.2/> or from the command-line, using a local installation. This package allows to call 'NetMHCIIpan' from R.
| Version: | 1.3.2 |
| Imports: | devtools, dplyr, rappdirs, readr, seqinr, stringr, testit, tibble |
| Suggests: | knitr, rmarkdown, testthat, spelling |
| Published: | 2023-11-08 |
| DOI: | 10.32614/CRAN.package.netmhc2pan |
| Author: | Richèl J.C. Bilderbeek
 [aut, cre],
Lue Ping Zhao [ctb],
Byungkuk Min [ctb] |
| Maintainer: | Richèl J.C. Bilderbeek <richel at richelbilderbeek.nl> |
| BugReports: | https://github.com/richelbilderbeek/netmhc2pan/issues |
| License: | GPL-3 |
| URL: | https://github.com/richelbilderbeek/netmhc2pan/ |
| NeedsCompilation: | no |
| SystemRequirements: | NetMHC2pan (https://services.healthtech.dtu.dk/service.php?NetMHCIIpan-3.2) |
| Language: | en-US |
| CRAN checks: | netmhc2pan results |
Documentation:
| Reference manual: | netmhc2pan.pdf |
| Vignettes: |
Demo |
Downloads:
| Package source: | netmhc2pan_1.3.2.tar.gz |
| Windows binaries: | r-devel: netmhc2pan_1.3.2.zip, r-release: netmhc2pan_1.3.2.zip, r-oldrel: netmhc2pan_1.3.2.zip |
| macOS binaries: | r-devel (arm64): netmhc2pan_1.3.2.tgz, r-release (arm64): netmhc2pan_1.3.2.tgz, r-oldrel (arm64): netmhc2pan_1.3.2.tgz, r-devel (x86_64): netmhc2pan_1.3.2.tgz, r-release (x86_64): netmhc2pan_1.3.2.tgz, r-oldrel (x86_64): netmhc2pan_1.3.2.tgz |
| Old sources: | netmhc2pan archive |
Linking:
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