phylorug: Visualize Clade Recovery and Support Across Phylogenetic Trees

Generates rug plot visualizations directly on tree nodes to illustrate clade recovery and support from multiple phylogenetic and phylogenomic analyses. As modern studies routinely employ diverse datasets and inference techniques producing potentially conflicting trees, 'phylorug' simplifies the comparison among these trees by consolidating clade recovery and support on a reference tree.

Version: 0.1.0
Depends: R (≥ 4.1.0)
Imports: ape, graphics, grDevices, phangorn, stats, tools, utils
Suggests: knitr, mockery, rmarkdown, testthat (≥ 3.0.0)
Published: 2026-11-06
DOI: 10.32614/CRAN.package.phylorug (may not be active yet)
Author: Md Rifath Ahamed ORCID iD [aut, cre, cph], J. Salvador Arias ORCID iD [aut], Sergei Tarasov ORCID iD [aut]
Maintainer: Md Rifath Ahamed <rifathahamed777 at gmail.com>
BugReports: https://github.com/mdrifathahamed/phylorug/issues
License: MIT + file LICENSE
URL: https://github.com/mdrifathahamed/phylorug, https://mdrifathahamed.github.io/phylorug/
NeedsCompilation: no
Citation: phylorug citation info
Materials: README, NEWS
CRAN checks: phylorug results

Documentation:

Reference manual: phylorug.html , phylorug.pdf
Vignettes: Introduction to phylorug (source, R code)

Downloads:

Package source: phylorug_0.1.0.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): phylorug_0.1.0.tgz, r-oldrel (arm64): phylorug_0.1.0.tgz, r-release (x86_64): phylorug_0.1.0.tgz, r-oldrel (x86_64): phylorug_0.1.0.tgz

Linking:

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