Implements Bayesian hierarchical models for estimating
antibody kinetic parameters from longitudinal serological data. Fits
two-phase within-host models capturing antibody rise, peak, and decay
following pathogen infection, using 'JAGS' for posterior inference.
Designed as the upstream companion to the 'serocalculator' package
for end-to-end seroepidemiological analysis. Methods are described in
Teunis and colleagues (2016) <doi:10.1016/j.epidem.2016.04.001> and Teunis
and van Eijkeren (2020) <doi:10.1002/sim.8578>.
| Version: |
0.1.0 |
| Depends: |
R (≥ 4.1.0) |
| Imports: |
cli, coda, dplyr, ggmcmc (≥ 1.5.1.2), ggplot2, purrr, rlang, runjags, scales, serocalculator (≥ 1.4.1), stats, tibble, tidyr, tidyselect, utils |
| Suggests: |
Hmisc, knitr, readr, rlist, sessioninfo, spelling, stringr, testthat (≥ 3.0.0), tidyverse, withr, vdiffr, fs, here, rjags, rmarkdown, magrittr, rex, quarto |
| Published: |
2026-06-02 |
| DOI: |
10.32614/CRAN.package.serodynamics (may not be active yet) |
| Author: |
Peter Teunis 
[aut, cph] (Author of the method and original code.),
Samuel Schildhauer
[aut, cre],
Kwan Ho Lee [aut],
Kristen Aiemjoy
[aut],
Douglas Ezra Morrison
[aut] |
| Maintainer: |
Samuel Schildhauer <sschildhauer at ucdavis.edu> |
| BugReports: |
https://github.com/UCD-SERG/serodynamics/issues |
| License: |
MIT + file LICENSE |
| URL: |
https://github.com/UCD-SERG/serodynamics,
https://ucd-serg.github.io/serodynamics/ |
| NeedsCompilation: |
no |
| SystemRequirements: |
JAGS (>= 4.3.1) |
| Language: |
en-US |
| Materials: |
README, NEWS |
| CRAN checks: |
serodynamics results |